Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0209 ATGGCTGCCGCCGCCGCTACAGCAGCTAGAGGTGGTGGTTTGGTTGTTCCACGGCCGGTGACATTTGTGACCGGAAACGCTAAGAAGCTGGAAGAAGTTCGAACCATTTTGGGCAACTCTATCCCCTTTCAATCTCTCAAGCTCGACTTGCCAGAATTGCAAGGCGAGCCTGAAGAAATCTCCAAAGAGAAAGCTCGATTGGCTGCTTCTCAGGTAAATGGACCTGTGCTCGTAGAAGACACCTGCCTATGTTTTAATGCTCTGAAAGGTCTACCAGGGCCATACATCAAGTGGTTCCTGCAGAAGATCGGCCATGAAGGTCTGAACAATTTGTTGATGGCATATGATGATAAATCTGCCTACGCTTTGTGTGCCTTTTCTTTTGCTCTCGGGCCCAATTCTGAACCTATTACATTTCTGGGTAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGCCCTAATGATTTTGGATGGGATCCGATTTTTCAACCTGATGGCTTTGATCAAACTTATGCCGAAATGCCCAAGGAAGAAAAGAACAAGATCTCGCACCGTTACAGGTCTCTTGCTCTGCTGAATGATGCAAGTCGGGTGATCCAATACAAACTAAGGATTTTCGTTTCGTTTTAG 630 46.67 MAAAAATAARGGGLVVPRPVTFVTGNAKKLEEVRTILGNSIPFQSLKLDLPELQGEPEEISKEKARLAASQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKIGHEGLNNLLMAYDDKSAYALCAFSFALGPNSEPITFLGKTPGKIVPPRGPNDFGWDPIFQPDGFDQTYAEMPKEEKNKISHRYRSLALLNDASRVIQYKLRIFVSF 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 972706 975490 + Conep14aG0021300.1 Cone14ag0209 452058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0209 209 Gene3D - 14 197 IPR029001 -
Cone14ag0209 209 NCBIfam RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 20 194 IPR002637 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone14ag0209 209 PANTHER INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN 17 195 IPR002637 GO:0005737(PANTHER)|GO:0009143(PANTHER)|GO:0009143(InterPro)|GO:0047429(InterPro)|GO:0047429(PANTHER)
Cone14ag0209 209 Hamap Inosine triphosphate pyrophosphatase [ITPA]. 18 196 IPR027502 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone14ag0209 209 FunFam Inosine triphosphate pyrophosphatase 14 197 - -
Cone14ag0209 209 CDD HAM1 20 192 IPR002637 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone14ag0209 209 Pfam Ham1 family 20 193 IPR002637 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone14ag0209 209 SUPERFAMILY ITPase-like 18 194 IPR029001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0209 K01519 - - vvi:100245879 348.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0209 Cone-Chr14:972706 Cone15ag0230 Cone-Chr15:1076678 2.25E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g843 . . . . . . . . . . . Cma14g01871 . Car14g01673 . . Cpe03g01569 Bhi01g00003 . . . . . . . . . . . . . Cone14ag0209 Cone15ag0230 . . Lsi05g01811 . . Cme06g00411 . Blo07g00295 Bda11g00658 . . Bpe13g00533 . Bma06g01624 . . Cmo14g01917 . . . . . . . . . . . . . Cla05g00373 Cam05g0406 Cec05g0411 Cco05g0411 Clacu05g0401 Cmu05g0386 Cre05g0448 . Csa03g01129 Chy06g00396 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007514 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35