Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0210 ATGGCGGCATTGTTTGGGAGAATAGATCGCTTCTGTCTTGTCCTGGTAATGATGCTGTACTTCGTTTGCACAATGTCCGAAGCTCGGGTAAAGAAAACAGAGCTGTTACAGAACTCGAGCAACTCAACAATGGCGATAAGAGAGCAAGAGGTTGAGGGTGTTAGGAACGAGCATGCAGTGGATGATCCGGAGGCGGTTGCCGCCATGGTGGAAATGAAAATACGCAACAGCACGGAAAGAAGAAACTTAGGATATTTCTCGTGTGGGACCGGAAACCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGCAGAAAAACCGAAAACGTCTGGCTGACTGTGGCATTGGGTTCGGTCGTAATGCCATAGGCGGCCGAGACGGTCGTTTCTATGTTGTAACTGATTCTCGGGATGATGACCCGGTCAACCCGATACCAGGGACCTTACGGCATGCAGTAATCCAAGACGAACCGTTATGGATCGTGTTCAATCGGGACATGGTCATACAATTGAAGCAAGAGTTGATCATGAATAGCTTCAAGACAATTGATGGGCGTGGGGTGAATGTTCACATTGCTAATGGAGCATGTCTTACTATACAATTTGTGACGAATGTGATCATACACGGTTTGCACATACATGACTGCAAGCCTACGGGGAATGCCATGGTTAGGAGCACACCGGAACATTATGGGTGGAGGACAATGGCAGATGGTGATGCGATCTCTATTTTTGGGTCTAGTCATATTTGGGTCGATCACAATTCTCTTTCTAATTGTGCTGATGGGCTTGTTGACGCTGTCATGGGGTCCACAGCCATTACCATCTCTAATAATCACTTCACCCACCACAATGAGGTGATATTGTTGGGTCATAGTGACACGTATACAAGAGACAAGCAAATGCAAGTGACCATTGCTTACAACCATTTTGGAGAAGGGCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCACGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCAATTGGTGGGAGTGCGGACCCCACAATCAATAGCCAAGGAAACAGATATGCAGCTCCGACCAATCCTTTTGCTAAAGAGGTTACTAAGCGGGTTGAAACATCTCAAAGTAAGTGGAAGAGTTGGAACTGGAGATCGGAAGGAGACCTGTTGTTGAACGGTGCATACTTCACTCCGTCCGGTGCGGGGGCCTCAGCTAGTTATGCTCGAGCCTCAAGCTTGGGAGCGAAGTCTTCTTCCTTGGTTGGGACCATAACTTCTTATGCTGGTGCACTCGGTTGCAAGAGAGGGCATCAATGCTAG 1323 47.62 MAALFGRIDRFCLVLVMMLYFVCTMSEARVKKTELLQNSSNSTMAIREQEVEGVRNEHAVDDPEAVAAMVEMKIRNSTERRNLGYFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSRDDDPVNPIPGTLRHAVIQDEPLWIVFNRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACLTIQFVTNVIIHGLHIHDCKPTGNAMVRSTPEHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDTYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVETSQSKWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSLVGTITSYAGALGCKRGHQC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 975609 978785 - Conep14aG0021400.1 Cone14ag0210 452059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0210 440 Pfam Pectate lyase 173 355 IPR002022 -
Cone14ag0210 440 SUPERFAMILY Pectin lyase-like 68 434 IPR011050 -
Cone14ag0210 440 FunFam Pectate lyase 91 433 - -
Cone14ag0210 440 SMART amb_all 166 363 IPR002022 -
Cone14ag0210 440 PANTHER PECTATE LYASE 18-RELATED 18 437 IPR045032 GO:0030570(InterPro)
Cone14ag0210 440 Gene3D - 91 433 IPR012334 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Cone14ag0210 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0192 Cone-Chr13:1209138 Cone14ag0210 Cone-Chr14:975609 3.12E-210 dispersed
Cone14ag0210 Cone-Chr14:975609 Cone17ag0671 Cone-Chr17:4247745 3.08E-238 dispersed
Cone14ag0210 Cone-Chr14:975609 Cone15ag0231 Cone-Chr15:1079114 5.10e-316 wgd
Cone14ag0210 Cone-Chr14:975609 Cone4ag0383 Cone-Chr4:1736681 3.39E-265 wgd
Cone14ag0210 Cone-Chr14:975609 Cone7ag0370 Cone-Chr7:1620380 1.30E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0210 K01728 - rcu:8258025 766.918