Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0212 ATGCAGAAAATGGAAAATTTCAACATTGATCAGGTAGATGATGTCCTTGATACTCCTGATAGATCAAATTTTGGACTGTGGAGAGGTGTTGAAGATAAACCTAGTTCATCTGCAAATGGTCATATGAACAGTTCAGATTTTATGGGAGAGAAATTAAGTAGTGAGGGCCATTGTACTGAAAATGGTCATAACTGGAGATCAGTTATCAAGCCGAAAAATATCATTAGTGATGAAGGTAGGGTTGGTAGTAGGAACTATATTGTCCTTTCTCCGGACAATTATAGTACTTCGAACAATGGTAATTCATCTAGAAGAGGAGGAGCTTCAGATAATAAGAGGTCAAGTGAGGAAAATAGGCATTCTATAAGTATCAGAAATATGGATAAAGGGAAAACTATACGTATTAAGTATCCGTTTAGTTCGTCTTGCCAAGATCATAGGCCTGTAGTGGATTCAACTGCAGAGAATGAAAGGAGCTATGGATCTAAAATGGGTGAAGGAAGTAATAGAAGATCAATGAAAATTTCTGATGTTGGTGCAGTAAATTTTATTATGGATTCTCCAGAGAAATCCCATAAAGATTTTAAGGGGAAGGAAAAAGTTGATGTTAATATTACTAGTAATGGTAGATATAAAGCTGAAAAACCAGCATTGGTGCCACTTAATTCTATGGCCTCTCCTAGAGTTAGTGGACAGAAGAGGTTGGTTCGGAATGGGTGTTTCTCTCCTCAAAACATAGCATTGAGGACCAAAGATTTAGATGTACAGTGTGGTAGAAGATTGCAATTTGTTGGACAGAGTGGCTTAGGGGATCATAGGGACAGAAAGAAAGGTAAAGAGGTCAATCTATGTCCTGTATCTCACACGAACGACGGAGGAGGAACCATTTCTGCATCTACCAGTCAAAGCAGAGGCAGGGTAAATCGGCCCTTGACTAATGAAGACAGGACCATTTCCATCACACTAGATGGTCGTAGAAAATTCATTAATCAACAACATCCTGACAGAACAACAAAACAAATGACTGTTCATCGAAATCAAGACACAGCTCAAAGTTCTAGTAGGGTTGTTCCTAATCGAGACCAGACATCCGGTCCGTGTCATGTGGAAAGCAGGTTTAATAAAAGACAAAAAAAGAATGGATCAAGTTTGATAGGTCATGGTGAATCTTGTGACTCAGATATTGTGTGTATTGGTTCCTCTAGACCACAAAGTCATCGAATTCAGGATATTTTGGATCCAATTATTGAGGTTGATAGCCTTAACAACGACAAGTCAACTGCTAAGGTTAGACAAATCGAAGCAGATGAGATGTTTGCTCGAGAACTCCAACAAGAGTTATATCATGAGACCCCTTTTGTAGGAAGCCGTGAGATTGATGAAAATATAGTATTGGTTCAGCAGCAAGAGGAGGATGCTCTCCAGAATGCTTCCAGTCAAAGCAATACTGCATACCGTCCTAGGCTTTCTTCAGCCAGGAGAAATTCAAATGCATCTAGACAGCCCCAAACTCGGTCCGTTCAAAGTACCAATAACAGAATTGGGTCCCGGACTAGATCTTCTATATCTGCTAGAATGATGCAGTCAAGAGGTCGCTTTCCTGGCGTTTCTCGAACAGTTTCGTCCTCTAGACAAAGGAATATTCATCATATTCCTTCAGATATATTGGAAGCATTAGGGAGCATGGCTGGGAATAGAAGTCGCATGAGAATGATTCAACGTGATTTCAACGAGAATGATTATGAAATGCTTTTGGCCCTCGATGAAAACAATCACAGACACTCTGGTGCATCGAATAATCGGATTAATAGTCTGCCAGAATCTACGGTACAGACCGATACATTCGAAGAAGCTTGTGCAATCTGTCTTGATATCCCAACTATTGGAGACGTGATTCGCATTCTCCCTTGCTTGCACAAATTTCACAGAGATTGCATTGATCCATGGCTAAACAGAAGAACTTCGTGCCCTGTTTGCAAGTCAACTATCACGTGA 1995 40.15 MQKMENFNIDQVDDVLDTPDRSNFGLWRGVEDKPSSSANGHMNSSDFMGEKLSSEGHCTENGHNWRSVIKPKNIISDEGRVGSRNYIVLSPDNYSTSNNGNSSRRGGASDNKRSSEENRHSISIRNMDKGKTIRIKYPFSSSCQDHRPVVDSTAENERSYGSKMGEGSNRRSMKISDVGAVNFIMDSPEKSHKDFKGKEKVDVNITSNGRYKAEKPALVPLNSMASPRVSGQKRLVRNGCFSPQNIALRTKDLDVQCGRRLQFVGQSGLGDHRDRKKGKEVNLCPVSHTNDGGGTISASTSQSRGRVNRPLTNEDRTISITLDGRRKFINQQHPDRTTKQMTVHRNQDTAQSSSRVVPNRDQTSGPCHVESRFNKRQKKNGSSLIGHGESCDSDIVCIGSSRPQSHRIQDILDPIIEVDSLNNDKSTAKVRQIEADEMFARELQQELYHETPFVGSREIDENIVLVQQQEEDALQNASSQSNTAYRPRLSSARRNSNASRQPQTRSVQSTNNRIGSRTRSSISARMMQSRGRFPGVSRTVSSSRQRNIHHIPSDILEALGSMAGNRSRMRMIQRDFNENDYEMLLALDENNHRHSGASNNRINSLPESTVQTDTFEEACAICLDIPTIGDVIRILPCLHKFHRDCIDPWLNRRTSCPVCKSTIT 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 989128 992216 - Conep14aG0021600.1 Cone14ag0212 452061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0212 664 MobiDBLite consensus disorder prediction 343 368 - -
Cone14ag0212 664 SMART ring_2 619 659 IPR001841 -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 268 368 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 144 170 - -
Cone14ag0212 664 CDD RING-H2_PA-TM-RING 619 660 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 26 64 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 474 527 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 328 342 - -
Cone14ag0212 664 ProSiteProfiles Zinc finger RING-type profile. 619 660 IPR001841 -
Cone14ag0212 664 FunFam RING/U-box superfamily protein 584 664 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 91 108 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 145 166 - -
Cone14ag0212 664 SUPERFAMILY RING/U-box 612 663 - -
Cone14ag0212 664 SMART ringv_2 618 660 IPR011016 GO:0008270(InterPro)
Cone14ag0212 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 664 IPR013083 -
Cone14ag0212 664 PANTHER SI:CH211-59O9.10 83 663 IPR051834 -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 288 318 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 109 129 - -
Cone14ag0212 664 Pfam Ring finger domain 618 660 IPR001841 -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 474 545 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 36 50 - -
Cone14ag0212 664 MobiDBLite consensus disorder prediction 91 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0212 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1140 Cone-Chr11:8790252 Cone14ag0212 Cone-Chr14:989128 4.66E-16 dispersed
Cone14ag0212 Cone-Chr14:989128 Cone18ag0440 Cone-Chr18:2144666 2.45E-16 dispersed
Cone14ag0212 Cone-Chr14:989128 Cone15ag0233 Cone-Chr15:1091499 1.74E-235 wgd
Cone14ag0212 Cone-Chr14:989128 Cone7ag0376 Cone-Chr7:1642801 1.43E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g856 . . . . . Bpe14g01298 . . . . . Cma14g01878 . Car14g01680 . Cpe08g00384 Cpe03g01575 . . . . . . . . . . . . . . Cone14ag0212 Cone15ag0233 . . Lsi05g01818 . . . . . . . . . . . . . Cmo14g01926 . . . . . . . . . . . . . . . . . . . . . Csa03g01121 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35