Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0247 ATGGCATTCAGCTTTGGTAATAAAGTTGGGAACCTATTGGGCCAGAGCATTTCTCAAAATGGAGCAGCACCTATGACATCTATGCTCAATTATGTTCGATGCATGTCAACATCCACAACCAAGCTTTTTATTGGAGGTTTATCATTCGGAACTGATGACCAGTCTCTTAAGGAAGCATTTTCAAGTTTTGGTGACATATCTGAAGCAAGGGTCATCATAGATAGAGACAGTGGGAGGTCCAAAGGATTTGGATTTGTCAACTTTGCTGACAGTGAATCTGCAAGCTCTGCAATGTCTGCCATGGATGGTCAGGAGCTAAGTGGGAGAAATATTAGAGTGAGTTTTGCAAGGGAGAGATCTGCCGGTCCAAGAAATTTTGGTGATGGTGGTTACGGAGGATATGGAGGAAATTGA 414 42.75 MAFSFGNKVGNLLGQSISQNGAAPMTSMLNYVRCMSTSTTKLFIGGLSFGTDDQSLKEAFSSFGDISEARVIIDRDSGRSKGFGFVNFADSESASSAMSAMDGQELSGRNIRVSFARERSAGPRNFGDGGYGGYGGN 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1143035 1149140 + Conep14aG0025200.1 Cone14ag0247 452096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0247 137 PANTHER GEO13361P1-RELATED 32 129 IPR050886 GO:0005739(PANTHER)|GO:0009651(PANTHER)
Cone14ag0247 137 Pfam RNA recognition motif 42 112 IPR000504 GO:0003723(InterPro)
Cone14ag0247 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723(InterPro)
Cone14ag0247 137 Gene3D - 32 137 IPR012677 -
Cone14ag0247 137 SMART rrm1_1 41 114 IPR000504 GO:0003723(InterPro)
Cone14ag0247 137 SUPERFAMILY RNA-binding domain, RBD 36 135 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0247 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1361 Cone-Chr12:10125531 Cone14ag0247 Cone-Chr14:1143035 3.46E-26 dispersed
Cone14ag0247 Cone-Chr14:1143035 Cone16ag0207 Cone-Chr16:1387062 3.30E-37 dispersed
Cone8ag1298 Cone-Chr8:10614734 Cone14ag0247 Cone-Chr14:1143035 1.31E-07 dispersed
Cone9ag1069 Cone-Chr9:6013257 Cone14ag0247 Cone-Chr14:1143035 1.01E-10 dispersed
Cone14ag0247 Cone-Chr14:1143035 Cone4ag0421 Cone-Chr4:1913987 2.34E-44 wgd
Cone14ag0247 Cone-Chr14:1143035 Cone7ag0411 Cone-Chr7:1829893 6.53E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92