Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0309 ATGGACGGCCGATCCCTGCCCCCTCACTTCCTCTCCAAAGACCTCCACCTCCACCCTGGCCACCACCGATTCTTCCAACACCACCATCAACAACCACAAAACTCCGAAGAAAATGACCAGGGTCAACAACAACAAAACCGCCGCCAAAAAGGAGATAGAGAAGAAGAAGAAAACGGTCAAAACATGAACCTCATGATCAACAACACAACCGATCAATTAGCAGGCAGCACCACAAGTACTGGAGGAGGAGGAGATCGTGATCGTGACCATAATAATCAATCGGATGAAATCACAAGAAGGCCCAGAGGCAGGCCCGCTGGGTCAAAAAACAAGCCCAAACCACCCATCATCATAACCCGGGACAGCGCCAACGCTCTCCGGTCCCATGTCATGGAAATCGCAACCGGCTGTGACATCATCGAGAGTGTTACGGTTTTTGCTCGGAGAAAGCAAAGAGGAGTTTGTATTTTGAGCGGAAGCGGAACCGTCACCAACGTCACTCTAAAACAACCTGCTTCAGTAGGTGCAGTTGTCACTTTACATGGTAGATTCGAGATTTTATCGCTTTCTGGATCGTTTTTGCCCCCTCCAGCCCCACCAGCAGCTTCTGGATTGACTATATATTTGGCTGGTGGACAAGGGCAGGTGGTCGGAGGGAGTGTGGTGGGTCCGCTTTTGGCGTCTGGGCCAGTGGTTATTATGTCAGCTTCGTTTGGTAATGCAGCGTATGAGAGGTTGCCGCTAGTTGAGGACGATGATATTGCAGCGGGGGTTCCGGGAAGTACTACTGGGCCTATCGGGTCGCCCGGAGTTGTTGGATCGGGCCAACTACAGCAGCAGCAGCAACTCATGATGGATCATACCACATCACCTTTGTTTCATGGGGTGCCGCAAAATCTTCTAAATTCATGTCAATTGCCTAATGAGGGTCACTGGGGAGGAACAGGTCGTCCACCTTTTTAA 963 50.88 MDGRSLPPHFLSKDLHLHPGHHRFFQHHHQQPQNSEENDQGQQQQNRRQKGDREEEENGQNMNLMINNTTDQLAGSTTSTGGGGDRDRDHNNQSDEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIATGCDIIESVTVFARRKQRGVCILSGSGTVTNVTLKQPASVGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMSASFGNAAYERLPLVEDDDIAAGVPGSTTGPIGSPGVVGSGQLQQQQQLMMDHTTSPLFHGVPQNLLNSCQLPNEGHWGGTGRPPF 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1438102 1439064 + Conep14aG0031500.1 Cone14ag0309 452158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0309 320 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 248 - -
Cone14ag0309 320 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 238 IPR005175 -
Cone14ag0309 320 PIRSF ESCAROLA 16 319 IPR014476 GO:0003680(InterPro)
Cone14ag0309 320 MobiDBLite consensus disorder prediction 83 103 - -
Cone14ag0309 320 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 319 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone14ag0309 320 ProSiteProfiles PPC domain profile profile. 123 262 IPR005175 -
Cone14ag0309 320 MobiDBLite consensus disorder prediction 60 82 - -
Cone14ag0309 320 CDD DUF296 127 194 IPR005175 -
Cone14ag0309 320 FunFam AT-hook motif nuclear-localized protein 126 253 - -
Cone14ag0309 320 Gene3D - 126 252 - -
Cone14ag0309 320 MobiDBLite consensus disorder prediction 25 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0388 Cone-Chr11:1912189 Cone14ag0309 Cone-Chr14:1438102 2.28E-99 dispersed
Cone14ag0309 Cone-Chr14:1438102 Cone15ag0335 Cone-Chr15:1556311 1.26E-160 dispersed
Cone14ag0306 Cone-Chr14:1406920 Cone14ag0309 Cone-Chr14:1438102 3.85E-19 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0309 - - - 0.0