Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0318 ATGGCGAATCTTCAGAGACGAGAACTCGAAAAGGACGAAGAGACGCGGGCCGTTGACGTGAGAACAAACGGCCGAGATGAGAACCTGCTTATAACCGGGTCCGGGAAGGATAAGGATCCGGGGCCGAGCAAAGCTCTAGCTTTAGCTCCGAAAGAAGAAGTGGAAGACCCGATTACGGAAATTCAGGTCGTACAGTCTGCAGTTGCTCAGCCGGCGAAGAGAGCTTCGACTAAGGACCGCCATACGAAAGTGGAGGGTCGTGGTCGGAGGATCCGAATGCCCGCTACTTGTGCCGCTCGTATTTTCCAGCTGACACGGGAACTCGGCCACAAGTCCGACGGAGAAACTATCAGATGGCTCCTCGAGCACTCTGAGCCGGCGATCATAGCAGCCACCGGTACCGGAACCATTCCCGCCATAGCCATGTCTGTTAACGGAACTCTTACAATCCCTACTACGCGACCGTCCGACCCGGAAACTAGCGACCCGTCAACCAATAAGAAGCGGAAAAAACCTGTCAACGGTGATTACGGGGACGTAAGCGATGCCGTTACGATCTCTGTCCCAAACGGTTTATCTCTCACCACTACTACTACCACTACCACCACACAGCAACAAGGTTTACCACAGGGTTTAGTTCCTATGTGGGCCATTCCTTCAAACGCCGTCGTTCCAGGCGCGTTCTTCATGTTCCCGCCGGTAGCTTCCATAGCCGGATCTTCAACTCAACCGCAGATATTTACATTTCCGGCGGCTTCTACTCCTCTTGTTAACATTTCGGCGAGACCTATTTCGTCTTTCATGTCATACCTACCTAATAACTCGACTACGATAAATTCCGCCTCGATTTCCAATTCAAGTAAGGCTACCTCGACGTCGTCTAAAGCTGATCAATCAGTCATGGCGCCGATTTCTTCTAGCTCCTGTAATACGAAGACGACCACGACGACAACGCCTCAGCTGCTTAGAGATTTTTCTTTAGAGATTTACGATAGACAAGAGCTTCAGTTCATGTCTCGCAAGCTGGAAGGTGGGGCCAACCATTGTTCTTCCCCTTTTTTCGAAGTGGGAGCACGTGGCAACGTCAACAACACGAGGGTGGTGGTGCTCCGTGGACCGTTCAAGGGTCACACTTAA 1137 51.72 MANLQRRELEKDEETRAVDVRTNGRDENLLITGSGKDKDPGPSKALALAPKEEVEDPITEIQVVQSAVAQPAKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHSEPAIIAATGTGTIPAIAMSVNGTLTIPTTRPSDPETSDPSTNKKRKKPVNGDYGDVSDAVTISVPNGLSLTTTTTTTTTQQQGLPQGLVPMWAIPSNAVVPGAFFMFPPVASIAGSSTQPQIFTFPAASTPLVNISARPISSFMSYLPNNSTTINSASISNSSKATSTSSKADQSVMAPISSSSCNTKTTTTTTPQLLRDFSLEIYDRQELQFMSRKLEGGANHCSSPFFEVGARGNVNNTRVVVLRGPFKGHT 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1501325 1502656 - Conep14aG0032400.1 Cone14ag0318 452167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0318 378 MobiDBLite consensus disorder prediction 281 315 - -
Cone14ag0318 378 MobiDBLite consensus disorder prediction 148 180 - -
Cone14ag0318 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 71 284 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone14ag0318 378 MobiDBLite consensus disorder prediction 1 50 - -
Cone14ag0318 378 MobiDBLite consensus disorder prediction 1 23 - -
Cone14ag0318 378 Pfam TCP family transcription factor 76 164 IPR017887 -
Cone14ag0318 378 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cone14ag0318 378 MobiDBLite consensus disorder prediction 161 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0318 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0038 Cone-Chr11:200499 Cone14ag0318 Cone-Chr14:1501325 2.48E-32 dispersed
Cone14ag0318 Cone-Chr14:1501325 Cone18ag1441 Cone-Chr18:9703268 3.98E-33 dispersed
Cone14ag0318 Cone-Chr14:1501325 Cone15ag0348 Cone-Chr15:1623578 8.78E-166 wgd
Cone14ag0318 Cone-Chr14:1501325 Cone6ag0740 Cone-Chr6:3733009 3.54E-65 wgd
Cone14ag0318 Cone-Chr14:1501325 Cone9ag0744 Cone-Chr9:3534491 1.66E-68 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44715 None None None None Cone TF