Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0331 ATGAGTTTTGGCGGTAGTAATTATTTCCTTCACAACAACATTAATTCGAGTGGTGGCGCCGTCCCAAGAACCGCCTCCTCCCCTCATATGCTATCCGAATCCATGTTTAACTCTCCTGGACTCTCTCTCGCCCTTAGTGATCATGTTATAGATGAGCAAGGAGATCAGGCAGCTAGAATGTTATTAATGTCTGAAAATTTTAAGAGTAGTATTACTGGACATGGTGGTGGATTAAGGAAGAGCAGAGAAGAATTAGATCAAGAGCAAGCTGAGAGTACTAGATCTGGCAGTGACAACATGGACGGCGCCGGTTCCGGCGATGATCTGGACGCCGGAGTTGATAACGATCTTAACCGCCCCAGAAAAAAACGATACCATAGACATACTCCTCAACAAATCCAAGAGCTAGAATCTTTGTTCAAGGAATGTCCTCATCCGGATGAGAAGCAAAGATTGGAGTTGAGCAGAAGGCTTTGCTTGGAAACAAGACAAGTCAAGTTCTGGTTCCAAAACCGACGAACCCAGATGAAGACCCAATTTGAGCGGCATGAAAAAACATTGTTAAGGCAAGAGAATGACAAGCTAAGAGCTGAGAACACGTCAATTAGAGAAGCTATTAGAAACCCAATGTGTTCAAATTGTGGAGGTCCTGCAATTCTAGGTGAAATCTCACTAGAAGAGGAACATCTTAGGGTCGAGAATGCCCGACTAAGAGACGAATTAGACCGCGTTTGTGGGCTTGCCGGGAAGTTTATGGGCTGCCTCATTCCGTCCATGGATCACACTAATTCAATAATCACTTCCACACCACCTACATTGCCAAGCTCATGTTTGGAACTTGGGGTTGGAAATAATGGTAGGGGTTTGACTATGGGTCTAACGATTCCGGATGTGGGGCCCGAGCTTGGAGGCGGGTTTCCAGGAAATTTGGCGGGTACAATTGATCCGTCCGTTGAGAGGTCTATGTATTTGGAGCTTGCCTTAGCTGCTATGGATGAACTTGTTAAGATGTCTAAAAAAGATGAACCACTTTGGATTAGAGGTTTAGAAGGTTCATCAAGTGGAAGGGAAGTTCTAAACCATGAAGAATATTCAAGGACATTCTGTAATTCTTGTTTTACAAGTAATGGGTTGATGAAACGTAATGGTAATTTTGTAATGGAAGGTTCTAGAGAGAATGGTATGGTTATCATCAACAGCTTAGCACTCGTTGAAACTTTGATGGATTCAAGCCGCTGGGCGGAGATGTTTCCTTGTATGATTGCAAGAACTAGAACCATAGATGTCATCTCGAGCGGTATGGAAGGAACCCGAAACGGTGCGCTTCAACTGATGCATGCTGAGCTTCAAGTGCTATCGCCTTTGGTGCCGGTCAGGGAAGTGAACTTTCTCCGGTTCTGCAAACAACATGCCGAAGGGGTTTGGGCCGTAGTCGACGTGTCGATTGACCATACTGGCCCCATGAGAGATCAAACCAATTATTGCAGGAGGCTTCCTTCTGGCTGTCTTGCGCAAGACCTGCCCAATGGCTACTCAAAGGTGACATGGATAGAACATGCAGAATACGACGAAACACAAGTCCACCGTCTCTACCGCCCATTGATCAGCTCCGGCATGGGCTTCGGAGCTCAGCGGTGGGTCGCCACCCTCGAACGCCAATGTCAATGTCTTGCCATCCTATTATCCTCCGCCTCACCCACCAGAGATCACACTTCACCAATTACTGCCGGCGGGCGGCGGAGCATGCTGAAACTGGCGCAACGAATGACCGACAACTTCTGTGCTGGAGTAAGCGCGTCGACGGTACATAAGTGGAATAAGCTTGTAAATTCCGGTGCAAGTATCCACCCGAACATTCGGGTTATGACCCGAAAGAGCGTTGATGATCCCGGAGAGCCACCAGGAGCGAGTGGGACATTTTATCCAACGGTGGTCCCATGCAGGAGATGGCCCACATTGCCAAAGGACAAGATCATGGCAACTGTGTTTCTCTTCTACGTGCCAGCGCAATGA 2013 47.34 MSFGGSNYFLHNNINSSGGAVPRTASSPHMLSESMFNSPGLSLALSDHVIDEQGDQAARMLLMSENFKSSITGHGGGLRKSREELDQEQAESTRSGSDNMDGAGSGDDLDAGVDNDLNRPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQFERHEKTLLRQENDKLRAENTSIREAIRNPMCSNCGGPAILGEISLEEEHLRVENARLRDELDRVCGLAGKFMGCLIPSMDHTNSIITSTPPTLPSSCLELGVGNNGRGLTMGLTIPDVGPELGGGFPGNLAGTIDPSVERSMYLELALAAMDELVKMSKKDEPLWIRGLEGSSSGREVLNHEEYSRTFCNSCFTSNGLMKRNGNFVMEGSRENGMVIINSLALVETLMDSSRWAEMFPCMIARTRTIDVISSGMEGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDHTGPMRDQTNYCRRLPSGCLAQDLPNGYSKVTWIEHAEYDETQVHRLYRPLISSGMGFGAQRWVATLERQCQCLAILLSSASPTRDHTSPITAGGRRSMLKLAQRMTDNFCAGVSASTVHKWNKLVNSGASIHPNIRVMTRKSVDDPGEPPGASGTFYPTVVPCRRWPTLPKDKIMATVFLFYVPAQ 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1544963 1549176 + Conep14aG0033800.1 Cone14ag0331 452180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0331 670 FunFam Homeobox-leucine zipper protein GLABRA 2 325 555 - -
Cone14ag0331 670 SMART HOX_1 120 183 IPR001356 GO:0003677(InterPro)
Cone14ag0331 670 Coils Coil 180 208 - -
Cone14ag0331 670 ProSiteProfiles START domain profile. 316 559 IPR002913 GO:0008289(InterPro)
Cone14ag0331 670 Gene3D - 394 553 IPR023393 -
Cone14ag0331 670 MobiDBLite consensus disorder prediction 14 33 - -
Cone14ag0331 670 SMART START_1 325 556 IPR002913 GO:0008289(InterPro)
Cone14ag0331 670 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 106 636 IPR042160 -
Cone14ag0331 670 MobiDBLite consensus disorder prediction 71 130 - -
Cone14ag0331 670 Pfam Homeodomain 122 177 IPR001356 GO:0003677(InterPro)
Cone14ag0331 670 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677(InterPro)
Cone14ag0331 670 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone14ag0331 670 FunFam Homeobox-leucine zipper protein HDG1 109 195 - -
Cone14ag0331 670 CDD homeodomain 121 179 IPR001356 GO:0003677(InterPro)
Cone14ag0331 670 MobiDBLite consensus disorder prediction 77 91 - -
Cone14ag0331 670 SUPERFAMILY Homeodomain-like 106 179 IPR009057 -
Cone14ag0331 670 CDD START_ArGLABRA2_like 320 555 - -
Cone14ag0331 670 SUPERFAMILY Bet v1-like 318 556 - -
Cone14ag0331 670 Pfam START domain 325 556 IPR002913 GO:0008289(InterPro)
Cone14ag0331 670 Gene3D - 111 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0331 Cone-Chr14:1544963 Cone15ag0108 Cone-Chr15:520933 2.39E-194 dispersed
Cone11ag0406 Cone-Chr11:2008083 Cone14ag0331 Cone-Chr14:1544963 1.32E-263 wgd
Cone12ag0484 Cone-Chr12:3140093 Cone14ag0331 Cone-Chr14:1544963 2.83E-126 wgd
Cone14ag0331 Cone-Chr14:1544963 Cone15ag0360 Cone-Chr15:1665508 0 wgd
Cone14ag0331 Cone-Chr14:1544963 Cone18ag1103 Cone-Chr18:8049457 3.46E-267 wgd
Cone14ag0331 Cone-Chr14:1544963 Cone8ag0486 Cone-Chr8:3377935 1.39E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44717 PF05875 Ceramidase 6.90E-55 CL0192 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0331 K09338 - rcu:8258519 814.298