Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0350 ATGGATCGAACGGACCCAGTGGCATTTTCCGGGTCACAGTCTTTCTATATGCAGCAGAGAGAAACATCTCCAAGTCTTCAATTCCAATCTTACCCTGAAGGCAATACCATCGGAGGATCAACATTACAAGCCGAACCATCTTCTAGAATTTCACATTATGGTGTTAATATGGGCGTTGCAATTTCCGGAGCACCCTCTAGCCAGCCTGTCAAAAGGAAAAGAGGAAGGCCTAGAAAATACGAACAGGACCGGACTTTCTCATTGGCCTTGCCCCCTTCATCTTCTACAAATCCTGGGATGATGACATCAGCGAGAAAAAGGGGTAGAGGGCGGCCACCCGGGTCCGGCAAGAAGCTGCAGTTATTAGCTTCTCCTGGAAAATGGAAGCTGTCTGATTCGGCAGGGATGGGATTTACACCTCATATTATCACCATTGCAATAGGAGAAGACATTGCCACAAAAATTATGTCATTTTCAGAACAGGGGCCGAGGGGCTTATGCATCTTATCAGCAAATGGATCGGTTTCTTCTGTTACTCTAAGTCAGCCTTCTTCTTCTGGAGGTTCTGTAACATTCGAGGGGCGTTTTGAGATAATATCTCTTTCAGGCTCATGCATGTTTAGCGATGGTAGTAGTAGCTCCGGCCAGAACTGCTCTGGCAGTTTAAGCATATTGCTTGCTAGTCCCGATGGTCGTGTTATTGGAGGTGGAATTGGAGGATTGCTTATTGCTGCAAGCCCTGTTCAGGTTATATTAGGGAGCTTCTTATGGGGTGGTTCAAAGACGAAGAGCAAGAAAAGAGAAGCTGAAGTTGTCATTGACACAGATTATCGAGCAGTAGATGATCCAACGGCTATAAGTGGTTTGCCGTCAATTCAACAAACTCCGATCAATTCTGAAAGTGTCTGGACCTCAATGGATATGTCTAATGCCCATAATATCGACATTGATCTTATGCGCGGATGA 966 45.55 MDRTDPVAFSGSQSFYMQQRETSPSLQFQSYPEGNTIGGSTLQAEPSSRISHYGVNMGVAISGAPSSQPVKRKRGRPRKYEQDRTFSLALPPSSSTNPGMMTSARKRGRGRPPGSGKKLQLLASPGKWKLSDSAGMGFTPHIITIAIGEDIATKIMSFSEQGPRGLCILSANGSVSSVTLSQPSSSGGSVTFEGRFEIISLSGSCMFSDGSSSSGQNCSGSLSILLASPDGRVIGGGIGGLLIAASPVQVILGSFLWGGSKTKSKKREAEVVIDTDYRAVDDPTAISGLPSIQQTPINSESVWTSMDMSNAHNIDIDLMRG 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1623455 1626186 - Conep14aG0035800.1 Cone14ag0350 452199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0350 321 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Cone14ag0350 321 MobiDBLite consensus disorder prediction 87 102 - -
Cone14ag0350 321 SMART AT_hook_2 71 83 IPR017956 GO:0003677(InterPro)
Cone14ag0350 321 SMART AT_hook_2 106 118 IPR017956 GO:0003677(InterPro)
Cone14ag0350 321 MobiDBLite consensus disorder prediction 59 120 - -
Cone14ag0350 321 MobiDBLite consensus disorder prediction 1 45 - -
Cone14ag0350 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 257 - -
Cone14ag0350 321 CDD DUF296 139 255 IPR005175 -
Cone14ag0350 321 MobiDBLite consensus disorder prediction 7 45 - -
Cone14ag0350 321 Gene3D - 140 275 - -
Cone14ag0350 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 279 IPR039605 GO:0003680(InterPro)
Cone14ag0350 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 255 IPR005175 -
Cone14ag0350 321 Pfam AT hook motif 106 117 IPR017956 GO:0003677(InterPro)
Cone14ag0350 321 Pfam AT hook motif 71 81 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0350 Cone-Chr14:1623455 Cone6ag0720 Cone-Chr6:3625087 3.41E-59 dispersed
Cone11ag0417 Cone-Chr11:2068492 Cone14ag0350 Cone-Chr14:1623455 6.34E-96 wgd
Cone12ag0311 Cone-Chr12:1708357 Cone14ag0350 Cone-Chr14:1623455 3.28E-40 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone15ag0383 Cone-Chr15:1761417 1.85E-181 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone18ag1088 Cone-Chr18:7983114 3.82E-99 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone6ag0774 Cone-Chr6:3945485 2.95E-52 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone8ag0311 Cone-Chr8:1798718 1.50E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0350 - - - 0.0