Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0428 ATGGCTCATCCTGAAGATAATAATCTCACAAAATCATCAGTTCCTCAAGGGGAGAAAGAATACATGTTTAAGGAGCTATGGAAAGCATGTGCAGGGCCTCTAGCAGAAATTCCTCAACCTGGGGAAAAAGTTTTCTATTTCCCTCAAGGTCATATGGAACAATTGAGAGCTTCAACAAATCAGGAACTAAATGAGCAAATTCCCCATTTTGGTCTTCCTGCCAAAATTCTCTGTCGCGTTTTCAACATTAATCTTATGGCAGAAAAAGAAACAGATGAGGTTTATGCTCAAATCACTCTGCATCCAGAACGAGATCAAAGTGATCTGTCATCAAGTCCGAATCCAGACCCACCTGATCCTCCGAGAAAAACCGTTCATTCATTCTGCAAAATTCTAACAGCTTCTGATACTAGCACTCATGGAGGATTCTCTGTTCTTCGTAAACATGCCTCTGAATGCTTGCCTCCATTGGACATGAATCAACCAACCCCTACTCAGGAATTAGTTGCCCAGGATCTTCATGGGTACGAATGGAGATTCAAGCATATTTTCCGAGGTCAACCAAGGAGGCATTTGCTAACAACTGGATGGAGTACTTTTGTTGCTTCAAAGAGATTAGCTGCAGGGGATGCATTTGTCTTCTTGAGGGGTGAAAATGGGGAATTGAGAGTTGGTGTAAGGCGACTTGCTCATCAGCAAAGTCCGATGCCTTCTTCTGTGATTTCGTGCCAAAGTATGCATCTTGGAGTGCTGGCTACTGCTTCTCATGCCATTATCACTCGAACCCTTTTCATCGTTTATTACCGGCCAAGGAAAACATGCCAATTCGTCATTAGCTTAAACAAGTACTTAGATTCAGTTAAGAATGGGTTTTCGGTTGGTATGCGGTTTAGAATGAGATTTGAGGGAGAGGACTCACCCGAAAGAAGGTTTACTGGAACAATAGTTGGAGTAGGGGATCTATCTCCACAATGGTCGGGTTCTATATGGCGGTCCTTGAAGGTTCAATGGGATGAACCAGCAACGATAGAAAGGCCGGAGAGGGTTTCATGTTGGGAGATAGAACCCTTTGTGCCTTCAACTTCCTTAAACTTCACTCAACCTTCACTAAAATATAAAAGGCCCCGGCCAGTTAAAATCCCTTCTTCTGAAATTACTTCCAGTTCAGCTGGCTCAACATTCCGGTTTCAAGGACCGTCGCTTTCTTCCCATGAAGCCCAAAGCAACAATAGCCCGGTAGGCTGCTGGGCTTCTATGCCCATCAATGTCTCTCTCAACCTTTTCCCAGACACAACCCATGATAATGATCTGGTTGAGAAAGGGAAGAAGTCCGAGACTACTACTCCCACTGGGTGCATTCTGTTTGGAGTTGATTTGGCCAAAGGTGGGCCTGCAAATGAAGAGAAGCAAACTGTTTTGGAGGCGGCAGGGAAGAGAACCCGAACAAAGGTTCAAATGGAAGGGGTATCAGTTGGCCGAGCAGTTGATTTGAGCATGTTGAAAGGGTACGAAGATCTTATAGACGAGCTTGAGAATATATTTGATATTAAAGGAGAGCTTCATGTTAAGAATAAATGGGCTATTGTTTTTACTGACAATGAAGATGATAAGATGTTAGCTGGAGATGACCCATGGCCGGAGTTCTGTAAGATGGTGAGGAAGATCTTTATCTGCTCAATCGACGAGGTGAAGAAGATGAGTGGAAGTAAAAGTATACTGAATTCATTATCCTCACTAGAATATGATCAAGAGACTTGCGTGAGCTTGGATCCAGAAGCATAG 1782 43.55 MAHPEDNNLTKSSVPQGEKEYMFKELWKACAGPLAEIPQPGEKVFYFPQGHMEQLRASTNQELNEQIPHFGLPAKILCRVFNINLMAEKETDEVYAQITLHPERDQSDLSSSPNPDPPDPPRKTVHSFCKILTASDTSTHGGFSVLRKHASECLPPLDMNQPTPTQELVAQDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVASKRLAAGDAFVFLRGENGELRVGVRRLAHQQSPMPSSVISCQSMHLGVLATASHAIITRTLFIVYYRPRKTCQFVISLNKYLDSVKNGFSVGMRFRMRFEGEDSPERRFTGTIVGVGDLSPQWSGSIWRSLKVQWDEPATIERPERVSCWEIEPFVPSTSLNFTQPSLKYKRPRPVKIPSSEITSSSAGSTFRFQGPSLSSHEAQSNNSPVGCWASMPINVSLNLFPDTTHDNDLVEKGKKSETTTPTGCILFGVDLAKGGPANEEKQTVLEAAGKRTRTKVQMEGVSVGRAVDLSMLKGYEDLIDELENIFDIKGELHVKNKWAIVFTDNEDDKMLAGDDPWPEFCKMVRKIFICSIDEVKKMSGSKSILNSLSSLEYDQETCVSLDPEA 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2007796 2011914 + Conep14aG0043800.1 Cone14ag0428 452277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0428 593 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Cone14ag0428 593 Gene3D - 125 229 IPR015300 -
Cone14ag0428 593 FunFam Auxin response factor 290 361 - -
Cone14ag0428 593 FunFam Auxin response factor 126 230 - -
Cone14ag0428 593 Gene3D - 290 362 - -
Cone14ag0428 593 ProSiteProfiles PB1 domain profile. 479 560 IPR053793 -
Cone14ag0428 593 MobiDBLite consensus disorder prediction 381 405 - -
Cone14ag0428 593 FunFam Auxin response factor 474 567 - -
Cone14ag0428 593 Gene3D - 475 567 - -
Cone14ag0428 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 568 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone14ag0428 593 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Cone14ag0428 593 Pfam Auxin response factor 254 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone14ag0428 593 SUPERFAMILY CAD & PB1 domains 478 555 - -
Cone14ag0428 593 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cone14ag0428 593 SUPERFAMILY DNA-binding pseudobarrel domain 120 257 IPR015300 -
Cone14ag0428 593 Pfam AUX/IAA family 467 515 IPR033389 -
Cone14ag0428 593 MobiDBLite consensus disorder prediction 102 125 - -
Cone14ag0428 593 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cone14ag0428 593 MobiDBLite consensus disorder prediction 380 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0428 Cone-Chr14:2007796 Cone19ag0688 Cone-Chr19:5790271 1.78E-198 dispersed
Cone14ag0428 Cone-Chr14:2007796 Cone15ag0465 Cone-Chr15:2208844 0 wgd
Cone14ag0428 Cone-Chr14:2007796 Cone6ag0864 Cone-Chr6:4412479 6.31E-206 wgd
Cone14ag0428 Cone-Chr14:2007796 Cone9ag0869 Cone-Chr9:4229505 6.87E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44730 PF16213 DCB 2.50E-41 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0428 K14486 - csv:101205805 766.148