Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0468 ATGTCTTTTACATGTGGATTGGTTAGTTATGACCACTGCTTTCTCCCTTCTGCACCTCCTCCTTTCCTTCGGGCCACTTCCATTTATTGCTGTCCTTTGATTTGTTACCATCACCCTGGAATAATATTCAAGACACAGAGAGAGAGAGAGAGAAACATGTCACAGCTCCATAGCACTTTAATGGAGGCCATTCAAGGGGGACCCATTAATCCTTGTTTCTATGAGGAAGAAGGGCATGTGGGTTTTTTGGAATGCATATTAGAACAGAAAATGGCAACAAATGAAGATGAAGAAGATCAAGAAGAAGAAGGAGAAACAGATAACAGGCCTTTTCTCCAGATACTACAAGCTAATGCAGAAGAATATTCCTCTTCACCATTACTAATGCTTAACAACATGCCGTTGATTAAAGATCCATCAGGCTGCAGCTTTCAGACATTGTTAATGCTTCAACAACAACAACAACAAAACCACCACCACCACCACCACCTCAATAATGACAATTACATTCAACAGCCTAGCACTAACTTGTTGTACAAACAACAAGAAGAGAAGATGATGTCAAGAACTAATTGTACTAATAACAAGGAAAATGGTGCGGGAAGAAGGAGGAAGAGGAAGAGAACAAGACCAAGTAAGAACAAGGAAGAAGTAGAGAGCCAGAGAATGACCCACATTGCTGTTGAGCGGAACCGTAGAAAGCAAATGAATGACCATCTAAATGTCCTTAGATCGCTCATGCCCTCTTCCTACATTCAAAGGGGAGACCAAGCTTCAATAATTGGAGGAGCAATAGATTTTGTAAATGAATTGGAGCAGCTGCTTCAATCACTAGAAGCACAAAAGAGAACAAAAAAAGGAGACATGATTAATATCGGTATCAATGGCGAAAATTCAGCAAGCTCATCATCATCGGCTTCTTCTTCTTCTTCTTCTAGTTCTTCTGCTTCTGCAATGGCTTCAACAATAATGACATCACTCTCACCATCATCACAATATAGATTGATTAACGGGGAAGATCATCAAGGAGAAGGAAGAAAAAAAGGAGGAGAAGCAGAGAACAAATCAGAAGCAGCAGATATAGAAGTGACTGTGATTCACAGCCATGTCAACTTAAAGATTCAATGCCCAAGAAGACCAGGCCAGTTGCTGAAAGCCATTGTTGCTTTACAAGATCTCTCCCTCTCCGTTCTTCATCTCAATATTACCACTTCCCAATCGTTAGTTCTCTTCTCTTTCAATCTCAAGATAGAGGATGAGTGTGAGCTAGGATCAGCCAATGAGATTGCAGCAGCTGTTCACCAAATCTTTAGCTACATCAACAGTAGTAGCTGTTAA 1338 40.66 MSFTCGLVSYDHCFLPSAPPPFLRATSIYCCPLICYHHPGIIFKTQRERERNMSQLHSTLMEAIQGGPINPCFYEEEGHVGFLECILEQKMATNEDEEDQEEEGETDNRPFLQILQANAEEYSSSPLLMLNNMPLIKDPSGCSFQTLLMLQQQQQQNHHHHHHLNNDNYIQQPSTNLLYKQQEEKMMSRTNCTNNKENGAGRRRKRKRTRPSKNKEEVESQRMTHIAVERNRRKQMNDHLNVLRSLMPSSYIQRGDQASIIGGAIDFVNELEQLLQSLEAQKRTKKGDMINIGINGENSASSSSSASSSSSSSSSASAMASTIMTSLSPSSQYRLINGEDHQGEGRKKGGEAENKSEAADIEVTVIHSHVNLKIQCPRRPGQLLKAIVALQDLSLSVLHLNITTSQSLVLFSFNLKIEDECELGSANEIAAAVHQIFSYINSSSC 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2244215 2246729 + Conep14aG0047900.1 Cone14ag0468 452317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0468 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 271 IPR011598 GO:0046983(InterPro)
Cone14ag0468 445 Pfam Plant bHLH transcription factor, ACT-like domain 361 429 IPR054502 -
Cone14ag0468 445 Coils Coil 83 103 - -
Cone14ag0468 445 MobiDBLite consensus disorder prediction 294 314 - -
Cone14ag0468 445 MobiDBLite consensus disorder prediction 291 314 - -
Cone14ag0468 445 Pfam Helix-loop-helix DNA-binding domain 221 272 IPR011598 GO:0046983(InterPro)
Cone14ag0468 445 CDD bHLH_AtFAMA_like 223 286 - -
Cone14ag0468 445 Gene3D - 211 286 IPR036638 GO:0046983(InterPro)
Cone14ag0468 445 PANTHER TRANSCRIPTION FACTOR FAMA 145 438 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone14ag0468 445 Coils Coil 268 288 - -
Cone14ag0468 445 MobiDBLite consensus disorder prediction 187 223 - -
Cone14ag0468 445 MobiDBLite consensus disorder prediction 339 356 - -
Cone14ag0468 445 MobiDBLite consensus disorder prediction 336 356 - -
Cone14ag0468 445 FunFam Basic helix-loop-helix transcription factor 211 286 - -
Cone14ag0468 445 SMART finulus 226 277 IPR011598 GO:0046983(InterPro)
Cone14ag0468 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 284 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0468 Cone-Chr14:2244215 Cone4ag0399 Cone-Chr4:1815296 5.21E-50 dispersed
Cone14ag0468 Cone-Chr14:2244215 Cone15ag0502 Cone-Chr15:2407532 6.52E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44736 PF00168 C2 4.10E-18 CL0154 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0468 - - - 0.0