Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0476 ATGGAGTTAGAGGGAGAAACTAGAGGGTTTTCTGATAAAGAAGAAGAGGAGGAGGAGGAAGAGGAAGATATCTCAAGGAATACTCCTAACTCTTCAAATTACACTGATTTTCTTCCTGAACACCACGCCAATCAATGGCAGACGGCATGTAGTACTAGCAAAACTACTGCTAATCATCATAATCATCTATCTGATCATGATGGGGCCACTAGATCTTACAATCAAATAGCTCCGGCCGAAGCCATCAATTTCATAGACTTGTCACTCAAAATCGATACCGACCATAGCCTTCCTGATGGTAATAGTGGTGGAGGTAGCAGTGATCAGCCTGTAATTAGTACCGGGTCGTGTTTCGAAAGAGAGCACATGTTTGATAAAGTAGTCACTCCAAGTGATGTCGGCAAGCTAAACCGGTTAGTAATCCCGAAACAACACGCGGAGAGATACTTTCCTCTGGACTCATCGACCAACGAGAAAGGCCTCATCCTGAATTTTGAAGATCGGAATGGGAAATCCTGGCGGTTCCGTTACTCTTATTGGAATAGTAGCCAGAGCTACGTCATGACAAAGGGTTGGAGTCGTTTTGTCAAGGAGAAGAAGCTCAACGCTGGAGATGTCGTCTCATTCCAACGTGGGGCGGGGGAGTTGAGGAAAGACCGCTTGTTCATCGACTGGCGGCGCCGTCCGGACACACCACCTGTGCCGCCACTTAACCCTTTATCTCTAAACCATCTTCAATCGGTCCGGTATAATTGGGGTGGAAATTACAGCATCAGACAATATATGGGTAGTACTAATTCTCCCTCTTCGGGACAATTAGCACCATTGCCTTTTCCACGGTATGGAGATATTTACCCTAATTACAACCACTATCATCAAAATTTCGATTTTTCCGGAAGGGTTAGCAGGGACGACTATAATGTGTTGAACTTTGGCTCGCGTTCTATTTACGGGGCTGCTCCGATGGTGATTGAGTCGGTTCCCGTGCCGTTTGTGGGCCACGCCCATGGTAAGAGTAGTAGTAGCAGTACTAGTGGTCATGTTAATGTTGCTGCTAAGAGGTTAAGGCTATTTGGAGTGAATATGGAGTGTGCTCATGTGAATGAAGAAGGTAGTAGTGCTAGTATTGGGTGTCACGACGACATGTTGTCTTCTACAACTTCAATTCCAGATCAATTCATGACGACATTGCCATTGCTTTCTTCTCCTCATGATGATCTACTTCCTCCAGCAGATCACAATGATCTCCAATCAAGATTACCTGTTAACCAATCCGAGTTTCCGAGGACATCAGGGAAAGCTGCTAATGCCGTGTCTTTCGATTGGATGATCAATCCCTCACCGTGA 1347 45.58 MELEGETRGFSDKEEEEEEEEEDISRNTPNSSNYTDFLPEHHANQWQTACSTSKTTANHHNHLSDHDGATRSYNQIAPAEAINFIDLSLKIDTDHSLPDGNSGGGSSDQPVISTGSCFEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSTNEKGLILNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLNAGDVVSFQRGAGELRKDRLFIDWRRRPDTPPVPPLNPLSLNHLQSVRYNWGGNYSIRQYMGSTNSPSSGQLAPLPFPRYGDIYPNYNHYHQNFDFSGRVSRDDYNVLNFGSRSIYGAAPMVIESVPVPFVGHAHGKSSSSSTSGHVNVAAKRLRLFGVNMECAHVNEEGSSASIGCHDDMLSSTTSIPDQFMTTLPLLSSPHDDLLPPADHNDLQSRLPVNQSEFPRTSGKAANAVSFDWMINPSP 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2312898 2314244 + Conep14aG0048700.1 Cone14ag0476 452325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0476 448 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 362 IPR044800 GO:0003700(InterPro)
Cone14ag0476 448 SMART B3_2 124 229 IPR003340 GO:0003677(InterPro)
Cone14ag0476 448 MobiDBLite consensus disorder prediction 1 38 - -
Cone14ag0476 448 Pfam B3 DNA binding domain 124 228 IPR003340 GO:0003677(InterPro)
Cone14ag0476 448 CDD B3_DNA 122 211 IPR003340 GO:0003677(InterPro)
Cone14ag0476 448 FunFam B3 domain-containing protein 117 237 - -
Cone14ag0476 448 ProSiteProfiles B3 DNA-binding domain profile. 124 229 IPR003340 GO:0003677(InterPro)
Cone14ag0476 448 SUPERFAMILY DNA-binding pseudobarrel domain 121 224 IPR015300 -
Cone14ag0476 448 Gene3D - 118 232 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1158 Cone-Chr13:9115197 Cone14ag0476 Cone-Chr14:2312898 1.40E-43 dispersed
Cone14ag0476 Cone-Chr14:2312898 Cone19ag0854 Cone-Chr19:6703569 2.32E-46 dispersed
Cone14ag0476 Cone-Chr14:2312898 Cone13ag0853 Cone-Chr13:7632578 4.59E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44738 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0476 K09287 - vvi:100259130 272.707