Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0513 ATGCCGGAGACGAAGGCTTTTTGGAGGGAAATGTTGGACTACGAATGGGGAAACCCGTCAACGATGATGTTTCCCGGCGAAGAACAAGAAGGAGGAGGAGGAGAAGGGTCCGAACCGAATTCTGAAACCGACCCGGCCCAACAGATCATGGACCACTACGCGTCTTCCACTCATCAGACTAACTTCAGTATTAACATTGACCAAAACAATACTATCAACCACCACCACCACCTTCCACCTACTCACCAACAACCCTCCGCCGCCGTAACTACTTTCTCTCACCACCACTTTAACCACCACCATCCTCAGGCCCACTTGACGAGTCCTACGTTCTACTACCCACGCGCTGACGTCACCGGGTCCCACTACGCGCCCCAACCTGGCCACCACCAGTACCCATTGCTCTCGCTCGACCCAACCTTCTCCAGCGTAGGAGGCGGAGGAGATGAGGCCCACGGGTTTTTACTAGTACCAAAAAACGAGGACGTGACGTTGCGGACAGGAGCCGGGCCCATGGATTTTGCGTCGAGGATTGGGCTGAATTTGGGAGGCCGTACTTATTTCTCTTCCTCGGAGGATGACTTTGTGAGCCGGCTCTACCGGCGTTCCAGACCGGCTCAAGACCCAGCCTCGTCTAACTCGCCCAGGTGTCAGGCCGAGGGGTGCAATGCCGACATGACTCACGCCAAACATTACCACCGCCGTCACAAGGTGTGCGAGTTTCATTCCAAGGCCTCTGCAGTCATCGCCGCCGGGCTGACTCAGCGTTTCTGCCAGCAGTGCAGCAGATTTCATGTTCTGGCGGAGTTTGATAACGGGAAACGGAGCTGCCGGAAGAGATTGGCGGACCACAACCGAAGAAGGCGGAAAACGCAGCTCACTAATCCAGAAAATGCTCCTAAGTCACAGCTTGATCACAACGCGGCCTCACCGTCCGATCATTCTACTCCTCTTTCCAGGTCACCAGCAGATTCCGGAGCTCATTCAACATCGTCTGTAACCGTTGCAATGTCCCCGCCGAGGATGACTCTGGATTGCTTTCAGCAAAGGACAACTTATCCGGCAGCCGCCACCGCATCTTCCGCGTCTTCAAGCTCACTTTTTTTCTCTGGTTCCTAG 1119 54.96 MPETKAFWREMLDYEWGNPSTMMFPGEEQEGGGGEGSEPNSETDPAQQIMDHYASSTHQTNFSINIDQNNTINHHHHLPPTHQQPSAAVTTFSHHHFNHHHPQAHLTSPTFYYPRADVTGSHYAPQPGHHQYPLLSLDPTFSSVGGGGDEAHGFLLVPKNEDVTLRTGAGPMDFASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAQDPASSNSPRCQAEGCNADMTHAKHYHRRHKVCEFHSKASAVIAAGLTQRFCQQCSRFHVLAEFDNGKRSCRKRLADHNRRRRKTQLTNPENAPKSQLDHNAASPSDHSTPLSRSPADSGAHSTSSVTVAMSPPRMTLDCFQQRTTYPAAATASSASSSSLFFSGS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2555290 2557782 + Conep14aG0052400.1 Cone14ag0513 452362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0513 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 338 IPR044817 GO:0003677(InterPro)
Cone14ag0513 372 MobiDBLite consensus disorder prediction 18 45 - -
Cone14ag0513 372 FunFam Squamosa promoter-binding-like protein 14 209 278 - -
Cone14ag0513 372 MobiDBLite consensus disorder prediction 281 340 - -
Cone14ag0513 372 Gene3D - 208 278 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone14ag0513 372 ProSiteProfiles Zinc finger SBP-type profile. 214 291 IPR004333 GO:0003677(InterPro)
Cone14ag0513 372 MobiDBLite consensus disorder prediction 295 340 - -
Cone14ag0513 372 Pfam SBP domain 217 290 IPR004333 GO:0003677(InterPro)
Cone14ag0513 372 SUPERFAMILY SBT domain 215 294 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0513 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0513 Cone-Chr14:2555290 Cone17ag0385 Cone-Chr17:1823945 1.72E-32 dispersed
Cone11ag0566 Cone-Chr11:3198762 Cone14ag0513 Cone-Chr14:2555290 1.99E-31 wgd
Cone14ag0513 Cone-Chr14:2555290 Cone15ag0539 Cone-Chr15:2661415 3.41E-193 wgd
Cone14ag0513 Cone-Chr14:2555290 Cone18ag0932 Cone-Chr18:6739327 1.54E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009074 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44747 PF00291 PALP 1.00E-56 CL0063 Cone TF