Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0513 ATGCCGGAGACGAAGGCTTTTTGGAGGGAAATGTTGGACTACGAATGGGGAAACCCGTCAACGATGATGTTTCCCGGCGAAGAACAAGAAGGAGGAGGAGGAGAAGGGTCCGAACCGAATTCTGAAACCGACCCGGCCCAACAGATCATGGACCACTACGCGTCTTCCACTCATCAGACTAACTTCAGTATTAACATTGACCAAAACAATACTATCAACCACCACCACCACCTTCCACCTACTCACCAACAACCCTCCGCCGCCGTAACTACTTTCTCTCACCACCACTTTAACCACCACCATCCTCAGGCCCACTTGACGAGTCCTACGTTCTACTACCCACGCGCTGACGTCACCGGGTCCCACTACGCGCCCCAACCTGGCCACCACCAGTACCCATTGCTCTCGCTCGACCCAACCTTCTCCAGCGTAGGAGGCGGAGGAGATGAGGCCCACGGGTTTTTACTAGTACCAAAAAACGAGGACGTGACGTTGCGGACAGGAGCCGGGCCCATGGATTTTGCGTCGAGGATTGGGCTGAATTTGGGAGGCCGTACTTATTTCTCTTCCTCGGAGGATGACTTTGTGAGCCGGCTCTACCGGCGTTCCAGACCGGCTCAAGACCCAGCCTCGTCTAACTCGCCCAGGTGTCAGGCCGAGGGGTGCAATGCCGACATGACTCACGCCAAACATTACCACCGCCGTCACAAGGTGTGCGAGTTTCATTCCAAGGCCTCTGCAGTCATCGCCGCCGGGCTGACTCAGCGTTTCTGCCAGCAGTGCAGCAGATTTCATGTTCTGGCGGAGTTTGATAACGGGAAACGGAGCTGCCGGAAGAGATTGGCGGACCACAACCGAAGAAGGCGGAAAACGCAGCTCACTAATCCAGAAAATGCTCCTAAGTCACAGCTTGATCACAACGCGGCCTCACCGTCCGATCATTCTACTCCTCTTTCCAGGTCACCAGCAGATTCCGGAGCTCATTCAACATCGTCTGTAACCGTTGCAATGTCCCCGCCGAGGATGACTCTGGATTGCTTTCAGCAAAGGACAACTTATCCGGCAGCCGCCACCGCATCTTCCGCGTCTTCAAGCTCACTTTTTTTCTCTGGTTCCTAG 1119 54.96 MPETKAFWREMLDYEWGNPSTMMFPGEEQEGGGGEGSEPNSETDPAQQIMDHYASSTHQTNFSINIDQNNTINHHHHLPPTHQQPSAAVTTFSHHHFNHHHPQAHLTSPTFYYPRADVTGSHYAPQPGHHQYPLLSLDPTFSSVGGGGDEAHGFLLVPKNEDVTLRTGAGPMDFASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAQDPASSNSPRCQAEGCNADMTHAKHYHRRHKVCEFHSKASAVIAAGLTQRFCQQCSRFHVLAEFDNGKRSCRKRLADHNRRRRKTQLTNPENAPKSQLDHNAASPSDHSTPLSRSPADSGAHSTSSVTVAMSPPRMTLDCFQQRTTYPAAATASSASSSSLFFSGS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2555290 2557782 + Conep14aG0052400.1 Cone14ag0513 452362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0513 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 338 IPR044817 GO:0003677(InterPro)
Cone14ag0513 372 MobiDBLite consensus disorder prediction 18 45 - -
Cone14ag0513 372 FunFam Squamosa promoter-binding-like protein 14 209 278 - -
Cone14ag0513 372 MobiDBLite consensus disorder prediction 281 340 - -
Cone14ag0513 372 Gene3D - 208 278 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone14ag0513 372 ProSiteProfiles Zinc finger SBP-type profile. 214 291 IPR004333 GO:0003677(InterPro)
Cone14ag0513 372 MobiDBLite consensus disorder prediction 295 340 - -
Cone14ag0513 372 Pfam SBP domain 217 290 IPR004333 GO:0003677(InterPro)
Cone14ag0513 372 SUPERFAMILY SBT domain 215 294 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0513 Cone-Chr14:2555290 Cone17ag0385 Cone-Chr17:1823945 1.72E-32 dispersed
Cone11ag0566 Cone-Chr11:3198762 Cone14ag0513 Cone-Chr14:2555290 1.99E-31 wgd
Cone14ag0513 Cone-Chr14:2555290 Cone15ag0539 Cone-Chr15:2661415 3.41E-193 wgd
Cone14ag0513 Cone-Chr14:2555290 Cone18ag0932 Cone-Chr18:6739327 1.54E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44747 PF00291 PALP 1.00E-56 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0513 - - - 0.0