Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0515 ATGGACAGGTACGGCTTACCGAGCTCTTCTGGAGCTGAGTGCTTTCCCATTGACGACCTCCTTGACTTCCCCAATGATGACGACCACCTCTTTTCGGCTTCCACTATTTCCTCCGCCGCCGCCACCACCATAACATCTTCCTATGACACCCATTTGACCAGCCACCAAAACCACTTTTCTCCGTCCTCAATATCCGACGTTAATCCCTCCTCCTTCGCCGACGATCTCTTCGTCCCCAACGATGAGGTCGCTCAGCTGGAATGGCTTTCACAGTTCGTTGAGGATTCCTTCACTCATTTCCCGTTGACCGACGTCGCCGCATTCCCTCCGAAAACATCGTCATCAATCTCCGGCAGAAGCTGCAGATGCAGTGGCAGTACTACTCCAAATGGGGACTCAAGATCAAGGTCGGCAGCTTCCTTGCTAGAGTCACCGACGGTGGAGAAAAAAGTGAAACCAACCGTCGGTAAAGATCATCGACAGATATTATCAGGCGGAGGGCTGCGTAGGTGTACACACTGCGCATCGGAGAGGACCCCGCAGTGGCGCACGGGACCACAAGGACCTAAGACACTATGCAATGCGTGCGGGGTACGTTATAAATCGGGTCGGTTAGTACCAGAATACCGACCTGCTTCGAGCCCGAGTTTCGTGCTGACTCAGCACTCGAATTCGCACCGAAAGGTTCTAGAACTCCGTCGGCAAAAGGAAGTCGTGCGGCAACAACATCAACGTCCGATGCAACAAGGAGGGGATCAGCAACAACAACAAGAGCACTTCTATCCTCACTCGCATGACTTCCAAGTTTGCTGA 813 53.01 MDRYGLPSSSGAECFPIDDLLDFPNDDDHLFSASTISSAAATTITSSYDTHLTSHQNHFSPSSISDVNPSSFADDLFVPNDEVAQLEWLSQFVEDSFTHFPLTDVAAFPPKTSSSISGRSCRCSGSTTPNGDSRSRSAASLLESPTVEKKVKPTVGKDHRQILSGGGLRRCTHCASERTPQWRTGPQGPKTLCNACGVRYKSGRLVPEYRPASSPSFVLTQHSNSHRKVLELRRQKEVVRQQHQRPMQQGGDQQQQQEHFYPHSHDFQVC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2572755 2574104 + Conep14aG0052600.1 Cone14ag0515 452364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0515 270 Gene3D - 168 216 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone14ag0515 270 MobiDBLite consensus disorder prediction 242 262 - -
Cone14ag0515 270 FunFam GATA transcription factor 158 246 - -
Cone14ag0515 270 PIRSF Txn_fac_GATA_plant 1 260 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cone14ag0515 270 CDD ZnF_GATA 170 217 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 227 - -
Cone14ag0515 270 ProSiteProfiles GATA-type zinc finger domain profile. 169 201 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 MobiDBLite consensus disorder prediction 111 162 - -
Cone14ag0515 270 MobiDBLite consensus disorder prediction 236 270 - -
Cone14ag0515 270 PANTHER GATA TRANSCRIPTION FACTOR 16 137 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cone14ag0515 270 Pfam GATA zinc finger 171 205 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 MobiDBLite consensus disorder prediction 111 142 - -
Cone14ag0515 270 SMART GATA_3 165 215 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0515 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0515 Cone-Chr14:2572755 Cone17ag0146 Cone-Chr17:745532 4.81E-46 dispersed
Cone14ag0515 Cone-Chr14:2572755 Cone15ag0541 Cone-Chr15:2676378 3.48E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g383 Blo01g00314 . Bda03g01053 Bda08g00019 . Bpe05g01125 Bma04g00965 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0515 Cone15ag0541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1134 . 87 384 C2C2-Gata Transcription Factor Family AT5G25830 50.8 5.8e-68 255.4
Cone20ag0589 . 24 318 C2C2-Gata Transcription Factor Family AT5G25830 51.9 7.6e-68 255.0
Cone14ag0515 . 1 241 C2C2-Gata Transcription Factor Family AT2G45050 54.3 8.5e-46 181.4
Cone15ag0541 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 50.2 3.2e-52 202.6
Cone14ag0515 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 53.6 2.8e-48 189.5
Cone6ag0635 . 1 510 C2C2-Gata Transcription Factor Family AT4G17570 54.3 4.7e-133 472.2
Cone9ag0640 . 1 526 C2C2-Gata Transcription Factor Family AT4G17570 52.6 1.0e-132 471.1
Cone12ag0412 . 1 482 C2C2-Gata Transcription Factor Family AT4G17570 51.1 1.7e-119 427.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018084 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44748 PF00176 SNF2_N 6.50E-65 CL0023 Cone TF