Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0515 ATGGACAGGTACGGCTTACCGAGCTCTTCTGGAGCTGAGTGCTTTCCCATTGACGACCTCCTTGACTTCCCCAATGATGACGACCACCTCTTTTCGGCTTCCACTATTTCCTCCGCCGCCGCCACCACCATAACATCTTCCTATGACACCCATTTGACCAGCCACCAAAACCACTTTTCTCCGTCCTCAATATCCGACGTTAATCCCTCCTCCTTCGCCGACGATCTCTTCGTCCCCAACGATGAGGTCGCTCAGCTGGAATGGCTTTCACAGTTCGTTGAGGATTCCTTCACTCATTTCCCGTTGACCGACGTCGCCGCATTCCCTCCGAAAACATCGTCATCAATCTCCGGCAGAAGCTGCAGATGCAGTGGCAGTACTACTCCAAATGGGGACTCAAGATCAAGGTCGGCAGCTTCCTTGCTAGAGTCACCGACGGTGGAGAAAAAAGTGAAACCAACCGTCGGTAAAGATCATCGACAGATATTATCAGGCGGAGGGCTGCGTAGGTGTACACACTGCGCATCGGAGAGGACCCCGCAGTGGCGCACGGGACCACAAGGACCTAAGACACTATGCAATGCGTGCGGGGTACGTTATAAATCGGGTCGGTTAGTACCAGAATACCGACCTGCTTCGAGCCCGAGTTTCGTGCTGACTCAGCACTCGAATTCGCACCGAAAGGTTCTAGAACTCCGTCGGCAAAAGGAAGTCGTGCGGCAACAACATCAACGTCCGATGCAACAAGGAGGGGATCAGCAACAACAACAAGAGCACTTCTATCCTCACTCGCATGACTTCCAAGTTTGCTGA 813 53.01 MDRYGLPSSSGAECFPIDDLLDFPNDDDHLFSASTISSAAATTITSSYDTHLTSHQNHFSPSSISDVNPSSFADDLFVPNDEVAQLEWLSQFVEDSFTHFPLTDVAAFPPKTSSSISGRSCRCSGSTTPNGDSRSRSAASLLESPTVEKKVKPTVGKDHRQILSGGGLRRCTHCASERTPQWRTGPQGPKTLCNACGVRYKSGRLVPEYRPASSPSFVLTQHSNSHRKVLELRRQKEVVRQQHQRPMQQGGDQQQQQEHFYPHSHDFQVC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2572755 2574104 + Conep14aG0052600.1 Cone14ag0515 452364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0515 270 Gene3D - 168 216 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone14ag0515 270 MobiDBLite consensus disorder prediction 242 262 - -
Cone14ag0515 270 FunFam GATA transcription factor 158 246 - -
Cone14ag0515 270 PIRSF Txn_fac_GATA_plant 1 260 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cone14ag0515 270 CDD ZnF_GATA 170 217 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 227 - -
Cone14ag0515 270 ProSiteProfiles GATA-type zinc finger domain profile. 169 201 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 MobiDBLite consensus disorder prediction 111 162 - -
Cone14ag0515 270 MobiDBLite consensus disorder prediction 236 270 - -
Cone14ag0515 270 PANTHER GATA TRANSCRIPTION FACTOR 16 137 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cone14ag0515 270 Pfam GATA zinc finger 171 205 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 MobiDBLite consensus disorder prediction 111 142 - -
Cone14ag0515 270 SMART GATA_3 165 215 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0515 270 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0515 Cone-Chr14:2572755 Cone17ag0146 Cone-Chr17:745532 4.81E-46 dispersed
Cone14ag0515 Cone-Chr14:2572755 Cone15ag0541 Cone-Chr15:2676378 3.48E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44748 PF00176 SNF2_N 6.50E-65 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0515 - - - 0.0