Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0518 ATGGCTTCTATTTTGATCATCCGCTGTTCTTACGTCGCTAGTTTCCTTTTGTTTCTTTTCCTTGTTTTCTCAACTACCCCTTGTTTCTGCTTCAATCCCAAGCTCGTTCATGTCTCGAAAGTTGGATATGGTACTTCTTCCGACTGGTCGCCTGCGGGTGCGACTTGGTATGGAAGCCCCACCGGTGCTGGCAGTGACGGAGGAGCTTGTGGGTATGGAAATGCGGTTGAGGTAGCCCCATTTTCCTCTCTAATTTCAGCAGGAGGTCCTTCTTTATTCAAATCGGGCAAAGGATGTGGAGCTTGTTATCAGGTAAGGTGCACTCAAAATGCTGAGTGCTCAGGCAATCCGGTGAGTGTGGTTATCACAGATAGCTGCTTAGGAGGTGTTTGTGTCTCGGACGCCGTTCATTTCGACTTGAGCGGTACTGCTTTTGGAGCCATGGCAACTTCTGGTCTTGCGGATCAACTCCAAAATGTGGGAATACTTTCTATTCAATATAGAAGGGTGGAGTGCGATTATCACGGCCAGAGCATAACATTTGTGATTGATCCTGGGTCCAATCCTTATTATCTTGCCATTCTCATCGAATATGAAGCTGGAGATGGAGACCTTTCTTCAGTCGAGCTCAAACAGGCAGGTGATTATGATTCATGGGTTCCTATGCAACAATCTTGGGGTGCAATTTGGAGGCTAAATTCGGGCTCGCCTCTACAAGGCCCATTTTCAATCCGGCTGACGACGCTCACGTCTGACAAGACCATTGTAGCGAATAACGTCATCCCGGCTGATTGGCAGGCTGGCGTAACTTATATGTCCCTTGTCAATTTTGACACTTAA 840 47.38 MASILIIRCSYVASFLLFLFLVFSTTPCFCFNPKLVHVSKVGYGTSSDWSPAGATWYGSPTGAGSDGGACGYGNAVEVAPFSSLISAGGPSLFKSGKGCGACYQVRCTQNAECSGNPVSVVITDSCLGGVCVSDAVHFDLSGTAFGAMATSGLADQLQNVGILSIQYRRVECDYHGQSITFVIDPGSNPYYLAILIEYEAGDGDLSSVELKQAGDYDSWVPMQQSWGAIWRLNSGSPLQGPFSIRLTTLTSDKTIVANNVIPADWQAGVTYMSLVNFDT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2595107 2596278 + Conep14aG0052900.1 Cone14ag0518 452367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0518 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 177 IPR007112 -
Cone14ag0518 279 Pfam Expansin C-terminal domain 179 262 IPR007117 -
Cone14ag0518 279 SUPERFAMILY PHL pollen allergen 178 273 IPR036749 -
Cone14ag0518 279 SUPERFAMILY Barwin-like endoglucanases 41 176 IPR036908 -
Cone14ag0518 279 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Cone14ag0518 279 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576(InterPro)
Cone14ag0518 279 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576(InterPro)
Cone14ag0518 279 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576(InterPro)
Cone14ag0518 279 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576(InterPro)
Cone14ag0518 279 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576(InterPro)
Cone14ag0518 279 CDD DPBB_EXPB_N 49 172 - -
Cone14ag0518 279 Gene3D - 174 277 IPR036749 -
Cone14ag0518 279 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone14ag0518 279 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone14ag0518 279 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone14ag0518 279 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone14ag0518 279 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone14ag0518 279 PANTHER EXPANSIN-B3 18 277 - -
Cone14ag0518 279 SMART dpbb_1 85 167 IPR007112 -
Cone14ag0518 279 Pfam Lytic transglycolase 86 167 IPR009009 -
Cone14ag0518 279 Gene3D - 33 173 IPR036908 -
Cone14ag0518 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1452 Cone-Chr12:10458242 Cone14ag0518 Cone-Chr14:2595107 7.08E-82 dispersed
Cone14ag0518 Cone-Chr14:2595107 Cone8ag1502 Cone-Chr8:11379574 4.04E-75 dispersed
Cone11ag0575 Cone-Chr11:3310570 Cone14ag0518 Cone-Chr14:2595107 3.87E-126 wgd
Cone14ag0518 Cone-Chr14:2595107 Cone15ag0545 Cone-Chr15:2711301 1.54E-118 wgd
Cone14ag0518 Cone-Chr14:2595107 Cone18ag0928 Cone-Chr18:6698060 7.74E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0518 - - - 0.0