Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0538 ATGGGTCAACTAAAAACACGGCTTTCTCTCTGTATAACCATTCTCTACGTATTTTCCCTCCTATCTGCCACCTCCGCCGACGACGCTGCGGTCATGGCCAAGCTAGCTACGTCTCTCTCTCCTGCCCCAAATGACTGGACTTCCACAAGCAACAATGGTTACTGTCATTGGACCGGCATAAACTGCGACTCATCAAACCGGGTCACTTCTATCAGCTTAAGCGCTAAGTCTCTGACCGGTACGCTTCCTGCTGATCTAAACTCTCTCACGGAACTCACTACCATCTCTCTCCAGAAAAACTCTCTATCTGGCCCGTTACCCTCCTTTGCCAACTTGACCAATCTAAAATCCCTTTACCTTGACAGCAACAACTTCACTTCCATACCATCTGGTTGCTTCCAAGGTCTTACCAACTTACAGACGTTAAGCTTGAGCCAGAATCTAGATCTCGTGCCGTGGACGATTCCAAATGAGTTGACTCAGTCATCTAGCTTGGTGACCCTGTACGCGTCAAACGCGAATATTATCGGGTCATTGCCGAATTTCTTCGAATCGTTTGCTAGCTTACAAAATCTTCGTCTTTCGTATAATAATCTTTCCGGGTCATTACCTCCTTCTCTGGGTGGGACTAACATTCGAAACTTATGGCTTAACAATCAGCTAAATGGGCTATCTGGCTCCATTGATGTGTTATCATCAATGGCTCAGTTGTATCAGGTTTGGCTTCAGAACAACCAGTTTACAGGTCAGATTCCAGATTTGTCAAAATGTCAGAATCTGTTCGATCTTCAGCTTAGAGATAATCAGTTTACGGGGCTTGTTCCATCTTCTTTAACTCAGATTTCAAGCTTGCAGAATGTTTCTCTCGATAACAACAATCTTCAAGGGCCTATTCCCGTGTTTGGATCAAAAGTTGTTGCTAATGTTGGGCCTAATACTAATAGCTTTTGTAAGGACACTCCTGGGCCTTGTGATCCTCAAGTCACTACATTGCTCGAGATTGCTGGAGGTTTCGGGTTTCCTCTTTCTCTTGCTGATGCTTGGCAAGGGAATGTTCCTTGCCAAGGTTGGTCTTTCATTGTTTGCACTAGTGTTAATATCACAACCATTAATCTTGGAAAGCAGCATTTGTCGGGGACAATCTCTCCTGAATTTGGGAATATCATGACTTTGAAGACGTTGTATTTGAATGATAATAATTTGACAGGTTCAATACCTGGTAATTTAGCAACATTGCCTCAGCTGCAAGTACTAGATGTGGCTAATAATAATCTTAGTGGTATTCTACCAAAATTCAGAGATGGAATCAAGGTGACCACAAGTGGGAACCCTTTGATCGGAACGGTTTTAAGCCCTGGAAGCGATGGAGGAAGTAGTTCTGCAGGTACAAATGGGACCACTACAGGTGGAAGCTCATCTCCTTCGTCGAATAAATCTTCAGTCTCCGCAGGTTTGATTAGTGGTGTGGTTATTGCTGTTGTTGTGTTTGTTCTGGTTATACTGTTTGTGGTGATACAATGTTATGTTAAGAACAAGCATAAGAAATTTGGTAAAGTGAATGATACTGAGAATGGTACAGAACTTGCTATTAAGAGTGAGACAGGGAGTGCTGTGAACGGCTATGCTGGAATTCCGAGTGAATTGCAAAGCCAGAGTAGTGGAGATCCCGGTGACTTTCATGTTTTTGAAGGTGGGAATGTTTCCATTTCAATACAAGTCTTAAGGCAAGTGACAAATAATTTTAGTGAAGATAACATTCTGGGTAGAGGAGGATTTGGAGTTGTGTACAAGGGGGAATTGCATGATGGGACCAAAATTGCAGTAAAGAGGATGGAATCTGTGGCAATGGGTACTAAAGGGTTGAATGAATTCCAGGCTGAAATTGCTGTCCTAACTAAAGTTAGGCATAGACATTTAGTTGCTCTTTTGGGGTATTGCATAAATGGGAATGAGAGATTGTTGGTCTACGAGTATATGCCTCAAGGGACTTTAACTCAACATTTGTTTGATTGCGAAGAAAATGGGTGCTCTCCTCTGACTTGGAAACAAAGAGTTAGCATAGCATTGGATGTGGGGAGAGGAGTAGAATATTTACACAGCTTAGCTCAACAAAGTTTTATTCATAGGGATTTGAAACCCTCCAATATACTTCTTGGTGATGACATGAGGGCTAAGGTTGCAGATTTCGGTTTAGTAAAAAATGCACCTGATGGAAAATACTCTGTCGAAACCCGTTTGGCTGGAACGTTTGGATATCTTGCTCCTGAATATGCAGCAACCGGAAGAGTGACAACAAAAGTTGACGTGTATGCATTTGGGGTGGTTCTAATGGAACTGATAACGGGCCGGAGAGCATTAGATGATACCATGCCAGACGAGCGGTCCCACTTGGTCACATGGTTCCGTAGGGTCCTCATCAATAAGGAGAACATTCCAAAAACCATTGATCAAGCCCTGAATTCAGACGAAGAAACCATGGAGAGCATATACAAAGTGACCGAGCTAGCAGGCCACTGCACGGCCCGTGAGCCGCACCAGAGACCTGATATGGGCCATGCCGTCAACATCTTGGGTCCGCTCGTCGAGCAGTGGAAGCCCAGTTGCCAACAAGATGAAGATGCTTATGGCATTGACTTGCATATGAGCCTTCCCCAAGCTCTTCAAAGATGGCAAGCCAATGAAGGAACTACTACAATGTTTAACAGTATGTCCCTCTCTAACACCCAATCGAGCATTCCCTCTAAACCTGCTGGATTTGCCGATTCCTTTGATTCGATGGATTGTAGATGA 2790 43.76 MGQLKTRLSLCITILYVFSLLSATSADDAAVMAKLATSLSPAPNDWTSTSNNGYCHWTGINCDSSNRVTSISLSAKSLTGTLPADLNSLTELTTISLQKNSLSGPLPSFANLTNLKSLYLDSNNFTSIPSGCFQGLTNLQTLSLSQNLDLVPWTIPNELTQSSSLVTLYASNANIIGSLPNFFESFASLQNLRLSYNNLSGSLPPSLGGTNIRNLWLNNQLNGLSGSIDVLSSMAQLYQVWLQNNQFTGQIPDLSKCQNLFDLQLRDNQFTGLVPSSLTQISSLQNVSLDNNNLQGPIPVFGSKVVANVGPNTNSFCKDTPGPCDPQVTTLLEIAGGFGFPLSLADAWQGNVPCQGWSFIVCTSVNITTINLGKQHLSGTISPEFGNIMTLKTLYLNDNNLTGSIPGNLATLPQLQVLDVANNNLSGILPKFRDGIKVTTSGNPLIGTVLSPGSDGGSSSAGTNGTTTGGSSSPSSNKSSVSAGLISGVVIAVVVFVLVILFVVIQCYVKNKHKKFGKVNDTENGTELAIKSETGSAVNGYAGIPSELQSQSSGDPGDFHVFEGGNVSISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMGTKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDCEENGCSPLTWKQRVSIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVTWFRRVLINKENIPKTIDQALNSDEETMESIYKVTELAGHCTAREPHQRPDMGHAVNILGPLVEQWKPSCQQDEDAYGIDLHMSLPQALQRWQANEGTTTMFNSMSLSNTQSSIPSKPAGFADSFDSMDCR 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2684562 2687941 - Conep14aG0054900.1 Cone14ag0538 452387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0538 929 Gene3D Ribonuclease Inhibitor 25 324 IPR032675 -
Cone14ag0538 929 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cone14ag0538 929 Pfam Leucine rich repeat N-terminal domain 325 363 IPR013210 -
Cone14ag0538 929 PANTHER OSJNBA0070M12.3 PROTEIN 10 929 IPR052422 -
Cone14ag0538 929 ProSiteProfiles Leucine-rich repeat profile. 114 135 IPR001611 GO:0005515(InterPro)
Cone14ag0538 929 FunFam Receptor-like kinase TMK4 26 322 - -
Cone14ag0538 929 ProSiteProfiles Leucine-rich repeat profile. 390 413 IPR001611 GO:0005515(InterPro)
Cone14ag0538 929 Gene3D Transferase(Phosphotransferase) domain 1 659 881 - -
Cone14ag0538 929 FunFam Leucine-rich repeat receptor-like kinase 326 449 - -
Cone14ag0538 929 Pfam Leucine rich repeat 91 147 IPR001611 GO:0005515(InterPro)
Cone14ag0538 929 ProSitePatterns Protein kinases ATP-binding region signature. 587 609 IPR017441 GO:0005524(InterPro)
Cone14ag0538 929 Gene3D Phosphorylase Kinase; domain 1 546 658 - -
Cone14ag0538 929 MobiDBLite consensus disorder prediction 449 477 - -
Cone14ag0538 929 SUPERFAMILY L domain-like 53 433 - -
Cone14ag0538 929 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Cone14ag0538 929 Gene3D Ribonuclease Inhibitor 326 449 IPR032675 -
Cone14ag0538 929 ProSiteProfiles Protein kinase domain profile. 581 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0538 929 CDD STKc_IRAK 587 860 - -
Cone14ag0538 929 MobiDBLite consensus disorder prediction 905 929 - -
Cone14ag0538 929 FunFam receptor protein kinase TMK1 659 876 - -
Cone14ag0538 929 Pfam Leucine Rich repeats (2 copies) 391 426 IPR025875 -
Cone14ag0538 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag0538 929 Pfam Protein tyrosine and serine/threonine kinase 584 854 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag0538 929 SUPERFAMILY Protein kinase-like (PK-like) 558 857 IPR011009 -
Cone14ag0538 929 SMART LRR_typ_2 412 434 IPR003591 -
Cone14ag0538 929 SMART LRR_typ_2 136 162 IPR003591 -
Cone14ag0538 929 SMART LRR_typ_2 112 135 IPR003591 -
Cone14ag0538 929 SMART LRR_typ_2 186 210 IPR003591 -
Cone14ag0538 929 FunFam receptor protein kinase TMK1 543 658 - -
Cone14ag0538 929 SMART serkin_6 581 865 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0538 K00924 - - csv:101213513 1348.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0607 Cone-Chr11:3750247 Cone14ag0538 Cone-Chr14:2684562 0 dispersed
Cone14ag0538 Cone-Chr14:2684562 Cone18ag0903 Cone-Chr18:6407345 0 dispersed
Cone14ag0538 Cone-Chr14:2684562 Cone14ag0539 Cone-Chr14:2689915 1.43E-232 tandem
Cone14ag0538 Cone-Chr14:2684562 Cone15ag0562 Cone-Chr15:2821303 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82086 PF07714 PK_Tyr_Ser-Thr 6.40E-47 CL0016 Cone PK