Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0572 ATGACTATAACTTCACTCTCTCTCATCAAGTTAACTTTCCTTTTCCTCCTCTTTTTCTTCCATCTCGTACCTTTAACTCTCTCATGTGTTACGGGCAATGCAATCGACGACTGCTGGCGATGCGATCCCAATTGGGAGCAAAACCGTCAGAGACTAGCCGACTGTTCTATTGGCTTTGGAAAAACTGCCATTGGTGGAAAAGGTGGTAGGATTTATGTGGTTAGTAGTGCAGCTGATGATGACCCAGTAAACCCTACCCCGGGAACCCTAAGACATGCAGTCATCCAAGATGAGGCGTTATGGATCATCTTCGCTCACGATATGATCATCAAATTGAAACAAGAATTGATCATGAACTCATTCAAAACAATTGATGGTAGAGGAGCAAGAGTCCACATCTTCGACGGTCCATGCATTACCATACAATACGTAACAAACATCATTATACACGGACTACACATAACCAACTGCACCCGAGGAGGAAACACTAACATAAGGGACTCCCCACGGCACTACGGGTGGAGAACAATATCGGACGGTGATGGTATCTCAATCTTTGGTGGGACCCACATATGGATTGACCATTGCACGTTGTCAAATTGCACCGATGGACTAATAGATGCGATAGAAGGGTCCACATCGATCACGATATCGAACAATCGCATGACACATCATGACAAGGTGATGTTGTTAGGCCATAGCGATTCCTACACTAAAGATAAGGAAATGGAAGTAACAATAGCCTTCAATCACTTCGGTGAAGGGCTTGTTCAAAGAATGCCGAGATGTAGACATGGATTTTTCCACGTGATTAACAACGATTACACGCGCTGGGAAATGTACGCGATTGGAGGGAGTGCGGACCCCACAATTCATAGTCAGGGGAATAGATTTGTCGCGCCGGATAATATGTTTAGTAAGGAAGTGACTAAGCATGAGGACGCAATAGAGAATGAATGGAAGAATTGGAATTGGAGGTCGGAAGGGGATTTGATGTTAAACGGTGCGTTTTTTACTGCTTCGGGAAGCATTCACGAAGGTTCTAGAAGCTTTTCTAGAAGTTCTGCCATTGGCAATGTTGTTAGGCCTTCTTCTCTTGTGAATTCATTAACTAGGACTGCCGGTGCACTTGCTTGTAGAAAGGGCTTTCCGTGCTGA 1158 44.56 MTITSLSLIKLTFLFLLFFFHLVPLTLSCVTGNAIDDCWRCDPNWEQNRQRLADCSIGFGKTAIGGKGGRIYVVSSAADDDPVNPTPGTLRHAVIQDEALWIIFAHDMIIKLKQELIMNSFKTIDGRGARVHIFDGPCITIQYVTNIIIHGLHITNCTRGGNTNIRDSPRHYGWRTISDGDGISIFGGTHIWIDHCTLSNCTDGLIDAIEGSTSITISNNRMTHHDKVMLLGHSDSYTKDKEMEVTIAFNHFGEGLVQRMPRCRHGFFHVINNDYTRWEMYAIGGSADPTIHSQGNRFVAPDNMFSKEVTKHEDAIENEWKNWNWRSEGDLMLNGAFFTASGSIHEGSRSFSRSSAIGNVVRPSSLVNSLTRTAGALACRKGFPC 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2824773 2825930 - Conep14aG0058400.1 Cone14ag0572 452421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0572 385 SUPERFAMILY Pectin lyase-like 27 379 IPR011050 -
Cone14ag0572 385 FunFam Pectate lyase 32 378 - -
Cone14ag0572 385 Gene3D - 32 378 IPR012334 -
Cone14ag0572 385 SMART amb_all 107 304 IPR002022 -
Cone14ag0572 385 PANTHER PECTATE LYASE 18-RELATED 27 382 IPR045032 GO:0030570(InterPro)
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Cone14ag0572 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Cone14ag0572 385 Pfam Pectate lyase 117 298 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0572 Cone-Chr14:2824773 Cone16ag0056 Cone-Chr16:296641 1.52E-213 dispersed
Cone14ag0572 Cone-Chr14:2824773 Cone2ag0944 Cone-Chr2:35120894 2.85E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0572 K01728 - gmx:100101868 598.971