Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0574 ATGGATGATATGGTGCTAGACTACGACAGTGAAGATGATGATGATGCAGAAGCTGATGAGTTTTTTGAGGATGATGCTGATGATTTTGATAGGATGGGGTCCCGTCGTCAAGAGATAAACTTTACCATATTAAAGGAATTAGATATACAGCAACGCCAGGATGATGATATTTATAGAGTCTCTACTGTTCTTTCGATTTCACGTGTAGCTTCAACCATTTTACTCCGTCACTTTAATTGGAATGTGAGCAAAGTGCATGATGAATGGTTCGCTGACGAATGTAGGGTAAGGAAACTAGTTGGCTTGTTGGATGCACCAGTTGTTCCACTTTCAAGTGCTAGAGAACTTACATGTGGGATCTGTTTTGAGTCTCTTCCTCAAGGAAGGATTAAATCAGCAGCTTGTGGCCATCCCTTTTGTAGTACATGCTGGGAAGGTTATATTAGTACAGCCATTAATGGTGGGCCTGGATGTTTGACACTAAGATGTCCCAATCCCTCCTGTTCTGCTGCTATTGGTCAAGATATGATTAATTTACTGGGGTCCAATGAGGACAATGAGAAGTATTCTCGGTACCTTCTTAGATCTTATATTGAAGATAATCGGAAGACGAAATGGTGTCCTGCGCCGGGTTGTGAGTATGCTGTTGTCTTTGATGCTGGTAATGGAAACTATGATGTTTCTTGCCTGTGTTCACATGGATTTTGCTGGAATTGTACAGAGGAAGCTCACCGTCCTGTAGACTGCGCTACTGTAGGAAACTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAACTGGATACTAGCCAACTCCAAGCCATGTCCAAAGTGCAAGCGACCAATTGAGAAGAACCAAGGGTGTATGCATATGACATGCACACCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTTCATGGTCAGAGCACGGTGAAAGGACAGGTGGATTTTATGCTTGCAATCGTTATGAGGCTGCTAAGCAAGAAGGCGCGTATGATGAGGCCGAGAGAAGAAGAGAAATGGCAAAGAATTCTCTGGAGAGGTACACTCATTATTATGAACGATGGGCTAGCAATCAAACGTCTAGGCAAAAAGCCCTCGTGGATTTGCAGCAAATGCAAACTGTGCATATTGAGAAACTCAGTGACATACATTGCACTCCAGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGTTACAGATAATTGAATGTAGGCGGGTTTTGAAGTGGACCTATGCATATGGGTACTACCTACCAGAAGAAGAGCATGCTAAGAGCAAGTTCTTCGAGTACTTGCAAGGTGAGGCTGAGTCTGGTCTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTATTACAGTTCCTTAATGCTGAGGGCCAATCTAAAGAATTTAATGACTTCCGAACAAAGTTAGCCGGTCTGACCAGTGTGACTCGTAATTACTTTGAAAACCTGGTCCGAGCATTGGAGAATGGCCTTTCAGATGTGGACTCCCATGGCGGAGCTAGTAGTGGGACGTCAAGCTCCAAAAACGCGGGGAGTAGTAAGGGTGGGAAAAGTGGAAAGGGTAAGGGAAATGGTCGAAACAGCAAACACGACGACAGTAGTGGTTATTGGTGTTGTGATCATTGTACCTATGCCAACATTAGGTCGGCTACCAATTGTCAAATGTGCCACCAACCAAAGTGA 1701 43.68 MDDMVLDYDSEDDDDAEADEFFEDDADDFDRMGSRRQEINFTILKELDIQQRQDDDIYRVSTVLSISRVASTILLRHFNWNVSKVHDEWFADECRVRKLVGLLDAPVVPLSSARELTCGICFESLPQGRIKSAACGHPFCSTCWEGYISTAINGGPGCLTLRCPNPSCSAAIGQDMINLLGSNEDNEKYSRYLLRSYIEDNRKTKWCPAPGCEYAVVFDAGNGNYDVSCLCSHGFCWNCTEEAHRPVDCATVGNWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWSEHGERTGGFYACNRYEAAKQEGAYDEAERRREMAKNSLERYTHYYERWASNQTSRQKALVDLQQMQTVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEEEHAKSKFFEYLQGEAESGLERLHQCAEKELLQFLNAEGQSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGGASSGTSSSKNAGSSKGGKSGKGKGNGRNSKHDDSSGYWCCDHCTYANIRSATNCQMCHQPK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2840263 2846368 - Conep14aG0058800.1 Cone14ag0574 452423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0574 566 SUPERFAMILY RING/U-box 187 256 - -
Cone14ag0574 566 Pfam IBR domain, a half RING-finger domain 187 249 IPR002867 GO:0008270(InterPro)
Cone14ag0574 566 Gene3D - 245 500 - -
Cone14ag0574 566 CDD BRcat_RBR_ANKIB1 194 258 - -
Cone14ag0574 566 Coils Coil 328 355 - -
Cone14ag0574 566 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 51 90 IPR048962 -
Cone14ag0574 566 ProSiteProfiles Zinc finger RanBP2 type profile. 539 566 IPR001876 -
Cone14ag0574 566 ProSiteProfiles TRIAD supradomain profile. 114 327 IPR044066 -
Cone14ag0574 566 ProSitePatterns Zinc finger RanBP2-type signature. 543 562 IPR001876 -
Cone14ag0574 566 SUPERFAMILY RING/U-box 114 199 - -
Cone14ag0574 566 MobiDBLite consensus disorder prediction 501 538 - -
Cone14ag0574 566 Pfam IBR domain 271 311 - -
Cone14ag0574 566 CDD Rcat_RBR_ARI7-like 272 326 - -
Cone14ag0574 566 SMART ibrneu5 262 323 IPR002867 GO:0008270(InterPro)
Cone14ag0574 566 SMART ibrneu5 187 249 IPR002867 GO:0008270(InterPro)
Cone14ag0574 566 FunFam RBR-type E3 ubiquitin transferase 250 500 - -
Cone14ag0574 566 Pfam Ariadne domain 336 497 IPR045840 -
Cone14ag0574 566 ProSiteProfiles Zinc finger RING-type profile. 118 164 IPR001841 -
Cone14ag0574 566 SUPERFAMILY RING/U-box 268 316 - -
Cone14ag0574 566 MobiDBLite consensus disorder prediction 501 520 - -
Cone14ag0574 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 201 IPR013083 -
Cone14ag0574 566 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 374 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone14ag0574 566 FunFam RBR-type E3 ubiquitin transferase 112 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0574 K11968 - - csv:101223037 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0574 Cone-Chr14:2840263 Cone1ag0851 Cone-Chr1:54266495 4.40E-307 dispersed
Cone14ag0574 Cone-Chr14:2840263 Cone15ag0588 Cone-Chr15:2993013 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1148 . 165 591 ARIADNE family AT4G34370 70.0 7.8e-174 607.4
Cone3ag1137 . 166 605 ARIADNE family AT4G34370 66.7 2.2e-168 589.3
Cone10ag1148 . 59 543 ARIADNE family AT2G16090 74.6 1.5e-213 739.6
Cone3ag1137 . 59 543 ARIADNE family AT2G16090 73.4 5.8e-210 727.6
Cone10ag1148 . 26 546 ARIADNE family AT3G27710 60.0 2.2e-178 622.9
Cone3ag1137 . 26 545 ARIADNE family AT3G27710 59.2 1.4e-175 613.6
Cone10ag1148 . 45 523 ARIADNE family AT3G27720 53.2 2.5e-136 483.0
Cone3ag1137 . 45 524 ARIADNE family AT3G27720 52.3 2.8e-135 479.6
Cone5ag0961 . 65 539 ARIADNE family AT1G05890 72.8 1.3e-219 760.0
Cone1ag0851 . 63 537 ARIADNE family AT1G05890 72.6 4.9e-219 758.1
Cone14ag0574 . 40 512 ARIADNE family AT1G05890 74.0 6.0e-217 751.1
Cone15ag0588 . 1 514 ARIADNE family AT1G05890 64.0 1.2e-209 726.9
Cone1ag0851 . 23 594 ARIADNE family AT1G65430 72.8 1.7e-256 882.5
Cone5ag0961 . 22 596 ARIADNE family AT1G65430 71.9 9.1e-255 876.7
Cone14ag0574 . 7 566 ARIADNE family AT1G65430 69.7 1.1e-239 826.6
Cone15ag0588 . 16 574 ARIADNE family AT1G65430 67.8 1.8e-231 799.3
Cone5ag0961 . 49 458 ARIADNE family AT2G31780 54.9 6.6e-144 508.1
Cone1ag0851 . 47 456 ARIADNE family AT2G31780 54.1 3.6e-142 502.3
Cone14ag0574 . 36 432 ARIADNE family AT2G31780 56.9 5.8e-140 495.0
Cone15ag0588 . 1 439 ARIADNE family AT2G31780 51.9 7.8e-137 484.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72