Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0574 ATGGATGATATGGTGCTAGACTACGACAGTGAAGATGATGATGATGCAGAAGCTGATGAGTTTTTTGAGGATGATGCTGATGATTTTGATAGGATGGGGTCCCGTCGTCAAGAGATAAACTTTACCATATTAAAGGAATTAGATATACAGCAACGCCAGGATGATGATATTTATAGAGTCTCTACTGTTCTTTCGATTTCACGTGTAGCTTCAACCATTTTACTCCGTCACTTTAATTGGAATGTGAGCAAAGTGCATGATGAATGGTTCGCTGACGAATGTAGGGTAAGGAAACTAGTTGGCTTGTTGGATGCACCAGTTGTTCCACTTTCAAGTGCTAGAGAACTTACATGTGGGATCTGTTTTGAGTCTCTTCCTCAAGGAAGGATTAAATCAGCAGCTTGTGGCCATCCCTTTTGTAGTACATGCTGGGAAGGTTATATTAGTACAGCCATTAATGGTGGGCCTGGATGTTTGACACTAAGATGTCCCAATCCCTCCTGTTCTGCTGCTATTGGTCAAGATATGATTAATTTACTGGGGTCCAATGAGGACAATGAGAAGTATTCTCGGTACCTTCTTAGATCTTATATTGAAGATAATCGGAAGACGAAATGGTGTCCTGCGCCGGGTTGTGAGTATGCTGTTGTCTTTGATGCTGGTAATGGAAACTATGATGTTTCTTGCCTGTGTTCACATGGATTTTGCTGGAATTGTACAGAGGAAGCTCACCGTCCTGTAGACTGCGCTACTGTAGGAAACTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAACTGGATACTAGCCAACTCCAAGCCATGTCCAAAGTGCAAGCGACCAATTGAGAAGAACCAAGGGTGTATGCATATGACATGCACACCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTTCATGGTCAGAGCACGGTGAAAGGACAGGTGGATTTTATGCTTGCAATCGTTATGAGGCTGCTAAGCAAGAAGGCGCGTATGATGAGGCCGAGAGAAGAAGAGAAATGGCAAAGAATTCTCTGGAGAGGTACACTCATTATTATGAACGATGGGCTAGCAATCAAACGTCTAGGCAAAAAGCCCTCGTGGATTTGCAGCAAATGCAAACTGTGCATATTGAGAAACTCAGTGACATACATTGCACTCCAGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGTTACAGATAATTGAATGTAGGCGGGTTTTGAAGTGGACCTATGCATATGGGTACTACCTACCAGAAGAAGAGCATGCTAAGAGCAAGTTCTTCGAGTACTTGCAAGGTGAGGCTGAGTCTGGTCTAGAAAGGCTTCATCAATGTGCCGAAAAGGAACTATTACAGTTCCTTAATGCTGAGGGCCAATCTAAAGAATTTAATGACTTCCGAACAAAGTTAGCCGGTCTGACCAGTGTGACTCGTAATTACTTTGAAAACCTGGTCCGAGCATTGGAGAATGGCCTTTCAGATGTGGACTCCCATGGCGGAGCTAGTAGTGGGACGTCAAGCTCCAAAAACGCGGGGAGTAGTAAGGGTGGGAAAAGTGGAAAGGGTAAGGGAAATGGTCGAAACAGCAAACACGACGACAGTAGTGGTTATTGGTGTTGTGATCATTGTACCTATGCCAACATTAGGTCGGCTACCAATTGTCAAATGTGCCACCAACCAAAGTGA 1701 43.68 MDDMVLDYDSEDDDDAEADEFFEDDADDFDRMGSRRQEINFTILKELDIQQRQDDDIYRVSTVLSISRVASTILLRHFNWNVSKVHDEWFADECRVRKLVGLLDAPVVPLSSARELTCGICFESLPQGRIKSAACGHPFCSTCWEGYISTAINGGPGCLTLRCPNPSCSAAIGQDMINLLGSNEDNEKYSRYLLRSYIEDNRKTKWCPAPGCEYAVVFDAGNGNYDVSCLCSHGFCWNCTEEAHRPVDCATVGNWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWSEHGERTGGFYACNRYEAAKQEGAYDEAERRREMAKNSLERYTHYYERWASNQTSRQKALVDLQQMQTVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEEEHAKSKFFEYLQGEAESGLERLHQCAEKELLQFLNAEGQSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGGASSGTSSSKNAGSSKGGKSGKGKGNGRNSKHDDSSGYWCCDHCTYANIRSATNCQMCHQPK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2840263 2846368 - Conep14aG0058800.1 Cone14ag0574 452423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0574 566 SUPERFAMILY RING/U-box 187 256 - -
Cone14ag0574 566 Pfam IBR domain, a half RING-finger domain 187 249 IPR002867 GO:0008270(InterPro)
Cone14ag0574 566 Gene3D - 245 500 - -
Cone14ag0574 566 CDD BRcat_RBR_ANKIB1 194 258 - -
Cone14ag0574 566 Coils Coil 328 355 - -
Cone14ag0574 566 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 51 90 IPR048962 -
Cone14ag0574 566 ProSiteProfiles Zinc finger RanBP2 type profile. 539 566 IPR001876 -
Cone14ag0574 566 ProSiteProfiles TRIAD supradomain profile. 114 327 IPR044066 -
Cone14ag0574 566 ProSitePatterns Zinc finger RanBP2-type signature. 543 562 IPR001876 -
Cone14ag0574 566 SUPERFAMILY RING/U-box 114 199 - -
Cone14ag0574 566 MobiDBLite consensus disorder prediction 501 538 - -
Cone14ag0574 566 Pfam IBR domain 271 311 - -
Cone14ag0574 566 CDD Rcat_RBR_ARI7-like 272 326 - -
Cone14ag0574 566 SMART ibrneu5 262 323 IPR002867 GO:0008270(InterPro)
Cone14ag0574 566 SMART ibrneu5 187 249 IPR002867 GO:0008270(InterPro)
Cone14ag0574 566 FunFam RBR-type E3 ubiquitin transferase 250 500 - -
Cone14ag0574 566 Pfam Ariadne domain 336 497 IPR045840 -
Cone14ag0574 566 ProSiteProfiles Zinc finger RING-type profile. 118 164 IPR001841 -
Cone14ag0574 566 SUPERFAMILY RING/U-box 268 316 - -
Cone14ag0574 566 MobiDBLite consensus disorder prediction 501 520 - -
Cone14ag0574 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 201 IPR013083 -
Cone14ag0574 566 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 374 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone14ag0574 566 FunFam RBR-type E3 ubiquitin transferase 112 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0574 Cone-Chr14:2840263 Cone1ag0851 Cone-Chr1:54266495 4.40E-307 dispersed
Cone14ag0574 Cone-Chr14:2840263 Cone15ag0588 Cone-Chr15:2993013 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0574 K11968 - csv:101223037 909.827