Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0577 ATGAAAATATGGGTCTCTCTTCTCTTTCTGGGTTTTGCTGTCCTGTACTATTGTTTTCAGGAACTGGGTCTCTCCTCTCTTTCTCTCACTGGTATGGCTGAAGAAACTCCCAAATCCATATACGATTTCTCCGTCAAGGACATTCGTGGGAATGATGTTAGTCTAAGTCAATACAATGGGAAGGTCCTTCTGATAGTGAATGTGGCATCAAAATGTGGCTTGACACAATCAAACTACAAGGAACTGAATGTTTTGTATGAAAAGTACAAAAGCCAAGGGTTTGAGATATTGGCATTTCCCTGCAATCAGTTTGCAGGGCAAGAGCCCGGAAGCAATGATGAGATTCAGGAAGTGGTATGCACCATGTTCAAAGCTGAATTCCCTGTTTTCGATAAGGTAGAGGTGAATGGTAAGAATGCAGCTCCCATTTACAAGTTTCTAAAATCACAGAAGGGGGGGATTTTTGGAGATGGAATCAAATGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGCAAGGTAGTGGAGAGATATGCTCCGACAACATCGCCTCTCAAAATCAAGAAAGATATCCAGAATCTATTGGGATCTTCTTCAAGCTAA 603 41.13 MKIWVSLLFLGFAVLYYCFQELGLSSLSLTGMAEETPKSIYDFSVKDIRGNDVSLSQYNGKVLLIVNVASKCGLTQSNYKELNVLYEKYKSQGFEILAFPCNQFAGQEPGSNDEIQEVVCTMFKAEFPVFDKVEVNGKNAAPIYKFLKSQKGGIFGDGIKWNFTKFLVNKEGKVVERYAPTTSPLKIKKDIQNLLGSSSS 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2861607 2863459 - Conep14aG0059100.1 Cone14ag0577 452426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0577 200 ProSitePatterns Glutathione peroxidases active site. 60 75 IPR029759 -
Cone14ag0577 200 PIRSF Glutathion_perox 13 199 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 FunFam Glutathione peroxidase 31 197 - -
Cone14ag0577 200 CDD GSH_Peroxidase 39 191 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 Pfam Glutathione peroxidase 40 148 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 PANTHER GLUTATHIONE PEROXIDASE 34 195 IPR000889 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Cone14ag0577 200 PRINTS Glutathione peroxidase family signature 58 75 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 PRINTS Glutathione peroxidase family signature 94 110 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 PRINTS Glutathione peroxidase family signature 159 168 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 SUPERFAMILY Thioredoxin-like 39 196 IPR036249 -
Cone14ag0577 200 Gene3D Glutaredoxin 31 197 - -
Cone14ag0577 200 ProSiteProfiles Thioredoxin domain profile. 34 196 IPR013766 -
Cone14ag0577 200 ProSiteProfiles Glutathione peroxidase profile. 30 200 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone14ag0577 200 ProSitePatterns Glutathione peroxidases signature 2. 97 104 IPR029760 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0577 K00432 - - rcu:8264294 330.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0312 Cone-Chr12:1711846 Cone14ag0577 Cone-Chr14:2861607 1.15E-56 dispersed
Cone14ag0577 Cone-Chr14:2861607 Cone6ag0772 Cone-Chr6:3937111 6.69E-86 dispersed
Cone14ag0577 Cone-Chr14:2861607 Cone8ag0312 Cone-Chr8:1801973 1.62E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1191 . . . . . Bpe14g01042 . . . . Cma06g01662 . Car06g01405 . . . . . . . . . . . . . . . . . . Cone14ag0577 . . . . . . Cme07g01902 . Blo07g00091 Bda11g00464 . . Bpe13g00735 . Bma06g01422 . Cmo06g01657 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198