Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0578 ATGTTGTCCATCCTGAGGTCACAGCGGCGGCCATCGAATTCGATACTCTACCTCCATTCTTTATTTTTTTCTTCAGCTGCTGCAATTGAAGCAGATCGAACAATTAGAGAAGGTCCGAGAAACCACTGGACGCGGCAGGAGATCAAGGACGTTTTCAACTCTCCAGTTCTCGATCTTCTTTACCATGGAGCTCAAGTTCACAGACATGCTCATAATTTCAGAGAGGTGCAGCAGTGTACTCTCCTCTCAATCAAAACGGGTGGGTGCAGTGAGGATTGCTCATATTGTCCCCAGTCCTCCAGGTATGACACTGGATTAAAGGCCCATAAACTAATGACAAAGGATGCTGTTTTGGAGGCAGCCGAGAAGGCAAAAGAGGCTGGTAGTACACGTTTTTGTATGGGTGCTGCATGGAGGGACACGGTAGGAAGAAAGACAAACTTCAACCAGATCCTTGACTACGTAAAAGAAATAAGGGGCATGGGGATGGAGGTTTGCTGCACCTTGGGCATGCTAGAGAAGCAGCAAGCTGTAGAACTCAAGAAAGCAGGCCTCACAGCATATAACCATAATCTTGATACCTCAAGGGAATACTACCCAAATATCATTACTACTAGGTCATATGATGAGCGCCTCCAAACCCTTGAGTTTGTTCGTGATGCTGGAATAAATGTCTGTTCAGGAGGGATAATAGGTCTTGGGGAAGCAGAAGAAGACCGAGTTGGTTTGTTGCACACATTGGCAACATTACCCACACACCCAGAGAGTGTTCCTATCAATGCGCTGGTTGCAGTGAAAGGCACGCCTCTTCAAGATCAAAAGCCGGTTGAAATATGGGAGATGATTAGAATGATAGCAACAGCACGAATAGTAATGCCAAAAGCAATGGTGAGATTATCAGCTGGTAGAGTCAAGTTCTCCATGCCTGAGCAAGCTTTATGCTTTCTTGCCGGAGCCAACTCTATCTTCACCGGAGAGAAGCTATTAACCACTGCAAACAACGATTTTGATGCGGACCAACAAATGTTCAACATTCTCGGACTTATCCCTAAAGCTCCCAGTTTCTCCGATGAAGCAGGAAAGACCTTCGACGAAGAAGAGGCTTGCGAAGAGGAAAAAGCTATTTCGAACTCAGGTTGA 1140 45.96 MLSILRSQRRPSNSILYLHSLFFSSAAAIEADRTIREGPRNHWTRQEIKDVFNSPVLDLLYHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGLKAHKLMTKDAVLEAAEKAKEAGSTRFCMGAAWRDTVGRKTNFNQILDYVKEIRGMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSREYYPNIITTRSYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVKFSMPEQALCFLAGANSIFTGEKLLTTANNDFDADQQMFNILGLIPKAPSFSDEAGKTFDEEEACEEEKAISNSG 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2865379 2868951 - Conep14aG0059200.1 Cone14ag0578 452427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0578 379 PIRSF Biotin_synth 25 357 IPR024177 -
Cone14ag0578 379 Hamap Biotin synthase [bioB]. 41 351 IPR002684 GO:0004076(InterPro)|GO:0009102(InterPro)
Cone14ag0578 379 Pfam Biotin and Thiamin Synthesis associated domain 258 348 IPR010722 -
Cone14ag0578 379 SMART MiaB 79 287 IPR006638 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone14ag0578 379 SUPERFAMILY Radical SAM enzymes 41 350 - -
Cone14ag0578 379 Pfam Radical SAM superfamily 84 245 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone14ag0578 379 NCBIfam biotin synthase BioB 42 348 IPR002684 GO:0004076(InterPro)|GO:0009102(InterPro)
Cone14ag0578 379 MobiDBLite consensus disorder prediction 357 379 - -
Cone14ag0578 379 SMART BATS_2 258 350 IPR010722 -
Cone14ag0578 379 SFLD Radical SAM 38 353 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone14ag0578 379 PANTHER BIOTIN SYNTHASE 24 373 IPR002684 GO:0004076(InterPro)|GO:0004076(PANTHER)|GO:0005739(PANTHER)|GO:0009102(InterPro)|GO:0009102(PANTHER)|GO:0051537(PANTHER)
Cone14ag0578 379 SFLD biotin synthase 38 353 IPR024177 -
Cone14ag0578 379 CDD Radical_SAM 86 286 - -
Cone14ag0578 379 ProSiteProfiles Radical SAM core domain profile. 74 303 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone14ag0578 379 FunFam Biotin synthase 40 353 - -
Cone14ag0578 379 Gene3D Aldolase class I 40 352 IPR013785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0578 K01012 - - mdm:103435437 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0578 Cone-Chr14:2865379 Cone15ag0591 Cone-Chr15:3019725 3.06E-224 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31