Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0610 ATGCCGCAACCGGGGTATGATATTAATGATCTTTATCAAGAAGCTCAAACCCGTTGGTTGAAGCCTTCGGAAGTGCACTTTATTTTAGAGAATCATGACAAGTACCAGCTGACTGAGGAGGCCTCAAAACAGCCAACAAGTGGATCTCTGTTTCTTTTTAACAAGCGAGTGCTCCGTTTTTTCCGTAAAGATGGTCACAACTGGCGTAAGAAAAAAGATGGAAGAACTGTTGGTGAAGCACATGAAAGGCTTAAGGTTGGAAATGTTGAAACTCTAAACTGTTACTATGCACATGGAGAGGAGAACCCCAATTTCCAGAGACGTAGCTATTGGATATTGGACCCATCATTGGATCACATCGTTCTTGTGCATTATAGAGATATTAGTAAGGGAAAGTTTGTGTCTGGATGTGCTCCCCAATTATCTCCAGGATCCTCTTCTGGTTTCGTTCAGAGCCCTGCATCATATTCTAATCAAATTCTGAGCTCTAGTTCTGAACATCAGCAGAATTTATTGAGTCCTGGATCTGTTGAAGTTAGTTCTGAGATAGCTAACCGTACTTATGGGGTAGATAGCTCTGAGAGACTCGATGGAACAGCTGACATGGTCAATTTGAATGGGGTTGATGTTTCCCAAGCTTTACGAAGACTTGAGGAACAATTAAGTTTGAATGATGACAGCCTCAAAGATATCGGTCCATTTTATCATCAGGATGAATATATAGATGATTCTCATCCCTACAATGGGGAGATATCCAACAGCGATCACTTTGCGACTTTTCAGAAACCAGAAAGTATTGTGCAAAGCCAGCTTTATGGACATTCTGTGATGCAAGGTGCTAAGGGCGAACATCATCCTGAAGCACTGGTTCATGACACTGCTATTGAACGTAAAGAATCTTTATCATGGAAAGAGGTTCTGGAGGCGTGTAGGACTTTACCAGGTTATGGGTCTCGTGAGAAAGAATCTTCAGAGTATGAATATGGAAAGCCGCTATTTTCTTCAGGAAAAGTTACAAATGAAGAGTGCGAGGACCATTATTGGTTTGATTCTGGTGGAAATGCTGTAGAAAATTCATCTCTATTGCTTGAGAGCCACGGGTTTCCAGCATATTCTTCAGTGATAGGAACTCATGACATCAGTACTGTATACAGTTCAATGTGTTTAGACCAAGGCCAAGGAATTCCCCTTGAATCAGATGCAAGTTTGACAATTGCACCGAAGCAGAAATTTACGATCTCTGAAATATCACCAGAGTGGGGTTATGCCACTGAGTCTACAAAGGTCATCATTGTTGGTTCGTTTCTCTGTGATCCATCAGAATCCTCATGGGCTTGTATGTTTGGTGATATCAAAGTTCCTCTTCAGATTGTTCAGGATGGTGTTATCCGTTGTGAAGCTCCTCCACACCTTCCTGGGAAGGTGACTCTGTGCATTACTGCCTCCAATAGAGAGTCTTGCAGTGAAGTAAGAGAATTCAATTATCGAGCTAACAATACTGTCTGTACTCGCTGTAATTCATCTTCAACAGAAGCTATGAAGAGCCCAGAAGAGTTGTTATTACTTGTCAGGCTCGCCCAGATGCTTCTGACAGACTTATCAACCTGGAAAGGTGAGCATGGAGATGAACTTTTGAGAAAACTGGGAGCTGATGATGATTCTTGGAGTTATGTGATCGAGTCTCTTTTAGTTGGCATTGGAACTTCTTCTGGGACCATTTATTGGCTTCTGGAAGAATTTCTAAAAGACAAGTTACAACAGTGGCTTTCTTCCAGAACTGAGGTTAAAGATGATCAGAATGGCTGTTCGTTGTCCAAGAAAGATCAAGGCATAATACATGTGGTTGCTGGACTGGGCTTTGAGTGGGCCTTAAACTCAATTCTCAGTTGTGGAGTTAGTGTAGATTTCCGTGACATTACTGGGTGGACTGCTCTACATTGGGCTTCACGCTTTGGAAGGGAAAAAATGGTTGCTGCCCTTATAGCTTCCGGTGCATCAGCTGGGGCAGTAACCGATCCAAGTACACAAGACCCGAATGGTAAAACACCTGCCTCAATTGCAGCATTCGGTGGCCACAAGGGTCTTGCAGGCTATCTATCAGAGGTTGCACTAACTAGACATCTATCATCCCTCACACTTGTGGAAAGCGAGCTTTCAAAAGGCTCTGCTGAGGTAGAAGCAGAAAGAACAGTAAATAGCATCTCAAATGCGAACAGCCTCTCTTCCAATGAGGATCAGCTCTCTCTTAAGGATACACTGGCTGCTGTTAGAAATGCTGCGCAGGCTGCTGCTCGAATTCAATCTGCATTTCGGGCACATTCTTTCAAAAAGCGACATGAAAGAGACTCAAGTAGAGATGAGTATGGAATTCATTCAAATGACCTTCGAGGCTTCTCTGCTATCTCAAAGCTAGCCTTTCGCAACTCAAGGGAGCACAATACAGCTGCTCTATCCATTCAAAAGAACTTTCGGGGTTGGAAGGGTCGTAAAGATTTCTTGTCATTCCGCAAGAAAGTTGTAAAGATTCAGGCTCATGTGAGGGGTTATCATGTTAGGAAACATGCCAAAGTGATCTGTTGGGCAGTTGGGATTCTTGATAAGGTTGTGCTGAGGTGGAGAAGGAAAGGAGTTGGTTTAAGAGGCTTTAGGCATGAGACGGAGTCGATAGATGAAAGTGAAGATGAAGACATTATCAAGGTGTTCCGTAAACAGAATGTGGAAGGAGCGATTGATGAAGCTGTCGCAAGAGTCCTGTCCATGGCGGAATCTCCAGAGGCTCGTCAACAATATAGACGCATGCTCGAAAAATATCGCCAAGCTAAGGCTGAACTTAATGGCTCGGCTGGTGAAGCAGTTGCATCAAATTCCCTTGGAGATGTTTATCGAAGAAGATGA 2895 43.28 MPQPGYDINDLYQEAQTRWLKPSEVHFILENHDKYQLTEEASKQPTSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEENPNFQRRSYWILDPSLDHIVLVHYRDISKGKFVSGCAPQLSPGSSSGFVQSPASYSNQILSSSSEHQQNLLSPGSVEVSSEIANRTYGVDSSERLDGTADMVNLNGVDVSQALRRLEEQLSLNDDSLKDIGPFYHQDEYIDDSHPYNGEISNSDHFATFQKPESIVQSQLYGHSVMQGAKGEHHPEALVHDTAIERKESLSWKEVLEACRTLPGYGSREKESSEYEYGKPLFSSGKVTNEECEDHYWFDSGGNAVENSSLLLESHGFPAYSSVIGTHDISTVYSSMCLDQGQGIPLESDASLTIAPKQKFTISEISPEWGYATESTKVIIVGSFLCDPSESSWACMFGDIKVPLQIVQDGVIRCEAPPHLPGKVTLCITASNRESCSEVREFNYRANNTVCTRCNSSSTEAMKSPEELLLLVRLAQMLLTDLSTWKGEHGDELLRKLGADDDSWSYVIESLLVGIGTSSGTIYWLLEEFLKDKLQQWLSSRTEVKDDQNGCSLSKKDQGIIHVVAGLGFEWALNSILSCGVSVDFRDITGWTALHWASRFGREKMVAALIASGASAGAVTDPSTQDPNGKTPASIAAFGGHKGLAGYLSEVALTRHLSSLTLVESELSKGSAEVEAERTVNSISNANSLSSNEDQLSLKDTLAAVRNAAQAAARIQSAFRAHSFKKRHERDSSRDEYGIHSNDLRGFSAISKLAFRNSREHNTAALSIQKNFRGWKGRKDFLSFRKKVVKIQAHVRGYHVRKHAKVICWAVGILDKVVLRWRRKGVGLRGFRHETESIDESEDEDIIKVFRKQNVEGAIDEAVARVLSMAESPEARQQYRRMLEKYRQAKAELNGSAGEAVASNSLGDVYRRR 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3037789 3046789 + Conep14aG0062400.1 Cone14ag0610 452459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0610 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 762 863 IPR027417 -
Cone14ag0610 964 CDD IPT 412 496 - -
Cone14ag0610 964 SMART iq_5 758 780 IPR000048 GO:0005515(InterPro)
Cone14ag0610 964 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
Cone14ag0610 964 SMART iq_5 811 833 IPR000048 GO:0005515(InterPro)
Cone14ag0610 964 ProSiteProfiles IQ motif profile. 836 859 - -
Cone14ag0610 964 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cone14ag0610 964 FunFam Calmodulin-binding transcription activator 2 406 499 - -
Cone14ag0610 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 941 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone14ag0610 964 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Cone14ag0610 964 Coils Coil 923 947 - -
Cone14ag0610 964 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cone14ag0610 964 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cone14ag0610 964 Gene3D - 578 709 IPR036770 -
Cone14ag0610 964 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515(InterPro)
Cone14ag0610 964 SMART ANK_2a 640 669 IPR002110 GO:0005515(InterPro)
Cone14ag0610 964 SMART ANK_2a 679 708 IPR002110 GO:0005515(InterPro)
Cone14ag0610 964 ProSiteProfiles IQ motif profile. 812 841 - -
Cone14ag0610 964 FunFam Calmodulin-binding transcription activator 2 811 859 - -
Cone14ag0610 964 SUPERFAMILY E set domains 412 496 IPR014756 -
Cone14ag0610 964 SUPERFAMILY Ankyrin repeat 607 701 IPR036770 -
Cone14ag0610 964 Pfam IQ calmodulin-binding motif 836 856 IPR000048 GO:0005515(InterPro)
Cone14ag0610 964 Pfam IQ calmodulin-binding motif 815 832 IPR000048 GO:0005515(InterPro)
Cone14ag0610 964 Pfam Ankyrin repeats (3 copies) 613 700 IPR002110 GO:0005515(InterPro)
Cone14ag0610 964 Gene3D - 811 859 - -
Cone14ag0610 964 Pfam IPT/TIG domain 412 484 IPR002909 -
Cone14ag0610 964 ProSiteProfiles IQ motif profile. 759 787 - -
Cone14ag0610 964 Gene3D Immunoglobulins 406 500 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0610 K21596 - - rcu:8286780 1117.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0610 Cone-Chr14:3037789 Cone8ag0227 Cone-Chr8:1250902 1.61E-144 dispersed
Cone14ag0610 Cone-Chr14:3037789 Cone15ag0616 Cone-Chr15:3199290 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44755 None None None None Cone TF