Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0613 ATGAGCTTGCTTCATGTATTTGGGTTTGGATTAAAGCTAGGGCATCTTATCTGGATGCTATGTTATTGGATTATATCATTGATTTCCATGAACTGGTTCATTAATGGTGGGATTATGGAAAGCAAGAAGAAGACTCCTCGCCTATTGTTCGAATTGTGGGACAAAATCACGGCCCAAAACAACACTACTCGAAAAATCCACCACCACCATCAATATTATCAGTATATGGGGTCTAAGAGGGTGAGGAAGACATGGTGGAGGAAGCTTCTAGTTGCTTGGTTGCTTGGGTGGAGCTTAGTGTCTCTATGGATCTTTTGGTACATGAGTTCTCAAGCTATAGAGAAGCGGAAAGAGACTCTTGCGAGCATGTGCGATGAACGGGCTAGGATGTTACAAGACCAGTTTAATGCGAGCATGAACCATATTCAGGCAATGTCCATTTTGATCTCAACCTTCCATCATGGCAAGAACCCGTCCGCCATTGATCAGAGCACTTTTGCGAGGTATACGGAACGGACTGCTTTTGAGAGGCCCCTAACAAGCGGGGTAGCATATGCTGTGAGGGTACTTCATGAGGAAAGAGATCAATTCGAGAAGCAACAAGGATGGACTATTAAGAGGATGGACACATTTGAACAAAACCCAGTTCATGAAGATGACTATGCGCCAGAAGCTTGTGAGCCGTCTCCAGTTGAGGAAGAATATGCTCCCGTTATCTTTGCGCAAGATACCATTTCACACGTTGTTTCACTTGATATGTTGTCCGGGAAGGAGGACCGTGAAAATGTGTTGTGTGCAAGAGCATCAGGAAAGGGGGTTCTAACGGCTCCTTTCAAGCTACTCAAAACAAACCGACTCGGAGTTATATTAACATTTGCTGTTTACAAGACTGATCTTCCTTCAAATGCTACACCAAAGGAGAGGATTCAAGCAACTGATGGGTATCTTGGCGGGGTTTTTGATATTGAATCACTTGTTGAGAAATTACTCCATCAGCTTGCAAGCAAGCAAACCATCCTTGTAAATGTTTATGACACGACCAATCACTCCCATCCAATCAGCATGTATGGTTCAAATGTATCGGACGATGGGTTGCAACATGCTAGCAGCCTTAACTTTGGAGATCCAATTAGAAAGCATGAGATGCATTGCAGATTCAAGCAAAAACCACCTTGGCCATGGCTAGCCATAACAACTTCAATCGGCATATACATTATTGCAATGCTTGTCGGGCATATATTTCATGCGACCTTGAATCGAATTGCCAAAGTTGAAGATGATTATCATGAGATGATGGAGCTCAAGAAACGGGCAGAAGCTGCTGATGTGGCCAAATCTCAGTTCCTTGCGACCGTCTCCCATGAAATCAGGACCCCAATGAATGGTGTACTAGGAATGTTGCATATGCTTATGGACACGGAGCTGGATGTTACACAGCAGGATTTTGTTAGAACAGCACAGGGAAGCGGAAAAGCTCTAGTCTCGCTTATTAATGAGGTTTTGGATCAGGCAAAGATAGAATCTGGTAAGCTTGAACTCGAAGCTGTGCAGTTTGATCTCCGAGCTATTTTGGACGATGTCCTATCTCTCTTTTCGGGGAAGTCTCAAGAAAAAGGAATAGAGTTGGCAGTTTACATATCTGACCGTGTTCCAGAGATGTTGATTGGTGATCCGGGAAGGTTTCGTCAAATCATTACTAACCTCATGGGAAACTCTATCAAGTTTACAGATAAAGGACACATCTTTGTCACAGTCCATCTGATTGAGGAGATGATGGGCTCAATCGAAGTTGAGACTGAAACATCCTCAAAGAACACCTTAAGTGGTTACCAAGTTGCAAATAGACGCCAGAGCTGGGCCGGGTTCAGGACTTTTTGTAGTCAAGAAGGGCTCTCTTCTCCTCCCACATCATCGGACCTTGTCAATTTAATCGTATCTGTCGAGGATACAGGTGTCGGGATCCCATTGGAAGCTCAATCCCGTGTTTTTACTCCTTTCATGCAGGTACGGGCCTCTATTTCCCGAACATATGGGGGAACAGGCATTGGCTTGAGTATAAGCAAGTGCTTAGTTACTCTCATGAAAGGAGAAATCGGGTTTGTGAGCGTACCTAAGATTGGATCCACTTTTACATTTACAGCTGTTTTCAGTAACAGCTTCTCCTCCAATTCAAATGAGTACAAGACCCAGAAGATCAATAACCCATCTAACCCCACGTCTACGGAATTTAAAGGTAGGACGGCATTACTTGTGGACCATAGACCGGTCCGAGCTGAGGTGTCACGATATCATATCCAACGGTTAGGAATTCATGTTGAATTGGTTCATGATTTCAGTCAAGGTCTATCTAGCATAAGCAATGTCAGGATACCTCTAAACATGGTCCTTGTAGAACAAGAAATTTGGGATCAAGATCCGGACGTGTCTGCTCACTTCTTCAATAACTTGAGAAGAAGTCCGGATGATGCAAATATTACTCCTCCGAAACTATTCCTTCTAACTAACTGTATTAGCCCTTCTTCAAAAGCAAGCCTTAATCTTTCCAATGTTGTTACCCCAACTGTGATAACAAAACCACTCAGGGCAAGTATGCTTGCTGCTTCACTGCAGCGGGCTATGGAGGTAGGGAACAAGGGTAATCGTCGGAATGGAGAGGTACCAGGTTTCTCCCTCCGGAATCTTCTTCTTGGGAGGAAGATTCTTATCGTGGATGATAATAATGTGAATCTTAGAGTTGCAGCGGGTGCTTTGAAAAAGTACGGAGCTGAAGTTGTTTGTGCGGATGGTGGGAAAAAGGCACTCTCGTTGCTTAAACCACCTCACAATTTTGACGCTTGCTTCATGGATATTCAAATGCCGGAAATGGACGGGTTTGAAGCTACAAAAAGGATTCGGGATATTGAACACGAAATCAATAGTAACCGAAATCAAGTGGGAGAAGTATCCTCATCAGTGGGGCCCAATGAAAATATTTCAAACCAGCATCTTCCCATATTGGCCATGACAGCAGATGTAATCCAGGCCACACATGAGGAGTGCTTGCGGTGTGGAATGGATGGATATGTTTCAAAACCTTTTGAAGCCGAACAACTCTACCGTGAAGCTTCTCGCTTTTTCCCTTCACCTCCAAATGGGGGTTTATAG 3144 43.96 MSLLHVFGFGLKLGHLIWMLCYWIISLISMNWFINGGIMESKKKTPRLLFELWDKITAQNNTTRKIHHHHQYYQYMGSKRVRKTWWRKLLVAWLLGWSLVSLWIFWYMSSQAIEKRKETLASMCDERARMLQDQFNASMNHIQAMSILISTFHHGKNPSAIDQSTFARYTERTAFERPLTSGVAYAVRVLHEERDQFEKQQGWTIKRMDTFEQNPVHEDDYAPEACEPSPVEEEYAPVIFAQDTISHVVSLDMLSGKEDRENVLCARASGKGVLTAPFKLLKTNRLGVILTFAVYKTDLPSNATPKERIQATDGYLGGVFDIESLVEKLLHQLASKQTILVNVYDTTNHSHPISMYGSNVSDDGLQHASSLNFGDPIRKHEMHCRFKQKPPWPWLAITTSIGIYIIAMLVGHIFHATLNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDFVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVQFDLRAILDDVLSLFSGKSQEKGIELAVYISDRVPEMLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEMMGSIEVETETSSKNTLSGYQVANRRQSWAGFRTFCSQEGLSSPPTSSDLVNLIVSVEDTGVGIPLEAQSRVFTPFMQVRASISRTYGGTGIGLSISKCLVTLMKGEIGFVSVPKIGSTFTFTAVFSNSFSSNSNEYKTQKINNPSNPTSTEFKGRTALLVDHRPVRAEVSRYHIQRLGIHVELVHDFSQGLSSISNVRIPLNMVLVEQEIWDQDPDVSAHFFNNLRRSPDDANITPPKLFLLTNCISPSSKASLNLSNVVTPTVITKPLRASMLAASLQRAMEVGNKGNRRNGEVPGFSLRNLLLGRKILIVDDNNVNLRVAAGALKKYGAEVVCADGGKKALSLLKPPHNFDACFMDIQMPEMDGFEATKRIRDIEHEINSNRNQVGEVSSSVGPNENISNQHLPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREASRFFPSPPNGGL 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3053568 3059842 - Conep14aG0062700.1 Cone14ag0613 452462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0613 1047 SUPERFAMILY CheY-like 742 874 IPR011006 -
Cone14ag0613 1047 SUPERFAMILY CheY-like 897 1036 IPR011006 -
Cone14ag0613 1047 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 642 713 IPR003594 -
Cone14ag0613 1047 Pfam CHASE domain 160 356 IPR006189 -
Cone14ag0613 1047 Gene3D - 508 719 IPR036890 -
Cone14ag0613 1047 SMART REC_2 898 1035 IPR001789 GO:0000160(InterPro)
Cone14ag0613 1047 Gene3D - 108 160 - -
Cone14ag0613 1047 ProSiteProfiles CHASE domain profile. 157 383 IPR006189 -
Cone14ag0613 1047 CDD PRTases_typeI 861 927 IPR000836 -
Cone14ag0613 1047 SMART HKATPase_4 556 718 IPR003594 -
Cone14ag0613 1047 ProSiteProfiles Response regulatory domain profile. 747 873 IPR001789 GO:0000160(InterPro)
Cone14ag0613 1047 CDD REC_hyHK_CKI1_RcsC-like 900 1033 - -
Cone14ag0613 1047 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 429 510 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone14ag0613 1047 CDD HisKA 444 505 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone14ag0613 1047 PRINTS Bacterial sensor protein C-terminal signature 678 696 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone14ag0613 1047 PRINTS Bacterial sensor protein C-terminal signature 643 657 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone14ag0613 1047 PRINTS Bacterial sensor protein C-terminal signature 661 671 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone14ag0613 1047 ProSiteProfiles Histidine kinase domain profile. 451 718 IPR005467 -
Cone14ag0613 1047 Gene3D - 412 507 - -
Cone14ag0613 1047 Pfam Response regulator receiver domain 900 970 IPR001789 GO:0000160(InterPro)
Cone14ag0613 1047 Coils Coil 421 441 - -
Cone14ag0613 1047 CDD HATPase_EvgS-ArcB-TorS-like 561 714 - -
Cone14ag0613 1047 SMART HisKA_10 444 509 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone14ag0613 1047 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 498 713 IPR036890 -
Cone14ag0613 1047 ProSiteProfiles Response regulatory domain profile. 899 1039 IPR001789 GO:0000160(InterPro)
Cone14ag0613 1047 Pfam His Kinase A (phospho-acceptor) domain 444 509 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone14ag0613 1047 Gene3D CHASE domain 161 390 IPR042240 -
Cone14ag0613 1047 PANTHER TWO-COMPONENT HISTIDINE KINASE 83 1038 IPR050956 -
Cone14ag0613 1047 FunFam Histidine kinase 4 416 507 - -
Cone14ag0613 1047 SMART CHASE_2 157 358 IPR006189 -
Cone14ag0613 1047 FunFam Histidine kinase 4 161 390 - -
Cone14ag0613 1047 Gene3D - 890 1038 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0613 Cone-Chr14:3053568 Cone8ag1386 Cone-Chr8:10973791 0 dispersed
Cone14ag0613 Cone-Chr14:3053568 Cone15ag0619 Cone-Chr15:3222099 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44756 PF12899 Glyco_hydro_100 3.50E-209 CL0059 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0613 K14489 - mdm:103452158 1582.0