Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone14ag0637 | ATGGCGGGAGAATCAGCGGATCCGAACCACGGTAATCCGCCTTCAACGCCGGATTCGCCAACATCTGCCGGTTTCAACACCGATCAGCTTCCTCACACTCCGACCTCCGAGAACTACTCCGACGAAGACGAGGCCGCCGTCGATCCTCAAATCATACGAGATGAGCCAGATGAAGTGGAGGCAGAGGAAGAAGAGGAGGACGGAGAGGATCTCTTCAACGACAATTTCATGGACGATTACCGGAGAATGGACGAGCATGACGAGTATGAATCTTTGGGTCTTGATGACTCAATTGAGGATGAGAGAGATCTCGACCAGATCATGCAAGACAGAAGAGCTGCTGAGATAGAGCTTGATGCTCGAGAGGTTCGTCAAACTGATCGCAAGCTTCCTCAGCTACTTCATGATCATGACTCTGAGGATGGGAACTATAGGCCTTCGAAGAGGTCTAGAGCTAATTTCAGGCCTCTGGCTGGTGCAGGAAATAATGATGACATGAATGGAACACCAAGTTCACCTGGGAGATCACAAAGAGAACACTCTAGAGATGATGTGCCCATAACTGATCACTCACTTGATGAGCAGTATGAGGATGAAGATGATGATGAAGCTGAGTTTGAAATGTATCGTGTTCAAGGGGCACTAAGAGAATGGGTTACTAGGGATGAAGTTCGCCGTTTCATAGGCAGGAAGTTCAAGGATTTCTTACAGACATATGTAAACCCAAAGAATGGACGTGATGAGCTTGAATACATGCGTCTGATAAATGAGATGGTGCTAGATAATAAATGTAGCCTCGAGGTTGATTATAAACAGTTCATCTACGTACATCCAAATATTGCCATCTGGTTGGCTGACGCCCCACAATCTGTTCTAGAGGTCATGGAAGATGTAGCAAAGAAGATTGTATTTGAAATACATCCAAATTACAAAAACATCCATCAGAAGATTTTTGTAAGAATTACTAACTTACCAGTTTACGATCAGATTCGAAATATTAGACAGATCCATTTGAATACTATGATTCGCATTGGCGGAGTTGTGACTCGACGTTCTGGCGTATTTCCCCAGCTGCAACAAGTAAAGTATGATTGTAACAAGTGTGGGACAATATTGGGGCCATTCTTTCAGAATTCATATTCAGAAGTCAAGGTTGGATCTTGCCCCGAATGCCAATCAAAAGGGCCTTTCACTGTGAATGTTGAGCAGACAATATACCGGAACTACCAAAAGCTTACCCTCCAAGAGAGTCCTGGAATTGTGCCCGCAGGTCGGTTTCCTAGATACAAAGAAGTGATCCTTTTGAATGATCTGATTGATTGTGCCCGACCTGGAGAAGAGATCGAGGTCACTGGCATCTATTCAAATAACTTTGACTTATCTTTGAACACCAAAAATGGGTTTCCAGTATTTGCCACTGTAGTAGAAGCAAACTATGTTGCGAAGAAACAAGATCTATTTTCTGCTTACAAACTTACCCAAGAAGACAAAGAAGAAATTGAAAAGTTGTCTAAGGACCCAAGAATAGGAGAAAGGATTTTCAAGTCCATTGCACCATCAATCTATGGCCACGAGGATATAAAAACAGCCCTTGCACTTGCTATGTTTGGAGGCCAAGAGAAAAATGTCCAAGGGAAGCACAGGCTCCGAGGAGACATTAATATACTTCTTCTAGGTGATCCAGGAACAGCCAAGTCACAATTTCTAAAGTATGTTGAAAAGACAGGTCAGAGGGCTGTTTATACCACAGGTAAAGGAGCTTCTGCTGTAGGGCTAACAGCAGCAGTGCACAAGGACCCGGTCACAAGGGAGTGGACCCTCGAAGGAGGAGCCCTTGTTTTAGCAGATAAAGGAATATGTCTTATTGATGAGTTTGACAAGATGAATGATCAGGACAGGGTGAGTATCCACGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAGGCTGGGATTGTCACATCTCTCCAGGCACGTTGCTCTGTAATTGCTGCTGCCAATCCTATTGGAGGAAGATATGATTCCTCAAAAACGTTTTCCCAGAATGTTGAGTTGACAGATCCCATCCTCTCTCGCTTCGACATCCTTTGTGTGGTGAAGGATGTGGTAGACCCTGTAATAGACGAGATGCTTGCAACATTTGTTGTAGACAGTCATGCTAGATCCCAACCCAAGGGTGCTAATTTAGATAATAAGTCCATCGGTGAGTCTGAAGAAGATATGCAGGAGTCATTTAGGCCAGTTGATCCTGAGATACTTGATCAAAATTTGCTGAAGAAATACATAACATATGCTAAGTTGAACATTTTCCCAAGGTTGCATGATGTCGATATGGAGAAGCTCAAACAGGTTTATGCTGAACTACGTAGAGAATCATCTCATGGGCAAGGAGTTCCTATTGCAGTAAGACACATAGAGTCAATGATAAGAATGTCTGAAGCTCATGCAAGAATGCATCTAAGACAGCATGTCATACAAGACGATGTGGACATGGCAATTCGCGTGTTGCTTGATTCATTTATTTCAACACAAAAATTTGGTGTGCAGAAAGCTTTGAAATGGAAATTCAGTAGATATATGACATATAAGAAGGACCAAAACCGGTTTCTCCTCCATCTTCTTAGTGAGCTTAGGAACAATGCTCAACACTTTGAGAAAATTGTTACCGGTTCTCTTAGAGGGCTTACTCATATTGAAGTGAAAGTAGAGGATTTGCAAAGAAAGGCTCAGGAATATGAAATCTATGATGATCTGAAAGTCTTCTTCTCCAGCAACGACTTTACTTCGTCCAATTTTGAATTGGATGCAGACCGAGGAGTCATCAAGCACCCCCTAAGAGATGTTGAAATATAG | 2853 | 42.97 | MAGESADPNHGNPPSTPDSPTSAGFNTDQLPHTPTSENYSDEDEAAVDPQIIRDEPDEVEAEEEEEDGEDLFNDNFMDDYRRMDEHDEYESLGLDDSIEDERDLDQIMQDRRAAEIELDAREVRQTDRKLPQLLHDHDSEDGNYRPSKRSRANFRPLAGAGNNDDMNGTPSSPGRSQREHSRDDVPITDHSLDEQYEDEDDDEAEFEMYRVQGALREWVTRDEVRRFIGRKFKDFLQTYVNPKNGRDELEYMRLINEMVLDNKCSLEVDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKKIVFEIHPNYKNIHQKIFVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRFPRYKEVILLNDLIDCARPGEEIEVTGIYSNNFDLSLNTKNGFPVFATVVEANYVAKKQDLFSAYKLTQEDKEEIEKLSKDPRIGERIFKSIAPSIYGHEDIKTALALAMFGGQEKNVQGKHRLRGDINILLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPILSRFDILCVVKDVVDPVIDEMLATFVVDSHARSQPKGANLDNKSIGESEEDMQESFRPVDPEILDQNLLKKYITYAKLNIFPRLHDVDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQDDVDMAIRVLLDSFISTQKFGVQKALKWKFSRYMTYKKDQNRFLLHLLSELRNNAQHFEKIVTGSLRGLTHIEVKVEDLQRKAQEYEIYDDLKVFFSSNDFTSSNFELDADRGVIKHPLRDVEI | 950 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3200945 | 3206343 | - | Conep14aG0065100.1 | Cone14ag0637 | 452486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone14ag0637 | 950 | Gene3D | - | 222 | 326 | - | - | |
| Cone14ag0637 | 950 | ProSitePatterns | MCM family signature. | 618 | 626 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cone14ag0637 | 950 | FunFam | DNA helicase | 357 | 407 | - | - | |
| Cone14ag0637 | 950 | Gene3D | - | 489 | 863 | IPR027417 | - | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 610 | 624 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 638 | 651 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 689 | 697 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 550 | 565 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 662 | 674 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | SMART | mcm | 326 | 841 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 82 | 104 | - | - | |
| Cone14ag0637 | 950 | FunFam | DNA helicase | 489 | 863 | - | - | |
| Cone14ag0637 | 950 | Pfam | MCM AAA-lid domain | 757 | 840 | IPR041562 | - | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 118 | 148 | - | - | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 118 | 202 | - | - | |
| Cone14ag0637 | 950 | Coils | Coil | 895 | 915 | - | - | |
| Cone14ag0637 | 950 | ProSiteProfiles | MCM family domain profile. | 509 | 715 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 56 | 73 | - | - | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 176 | 192 | - | - | |
| Cone14ag0637 | 950 | Gene3D | - | 357 | 407 | - | - | |
| Cone14ag0637 | 950 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 519 | 841 | IPR027417 | - | |
| Cone14ag0637 | 950 | SUPERFAMILY | Nucleic acid-binding proteins | 231 | 478 | IPR012340 | - | |
| Cone14ag0637 | 950 | Gene3D | - | 330 | 455 | IPR012340 | - | |
| Cone14ag0637 | 950 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 221 | 907 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER) | |
| Cone14ag0637 | 950 | FunFam | DNA helicase | 222 | 326 | - | - | |
| Cone14ag0637 | 950 | CDD | MCM2 | 512 | 839 | - | - | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 339 | 356 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 362 | 374 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 473 | 484 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 397 | 411 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cone14ag0637 | 950 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 458 | 469 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cone14ag0637 | 950 | Pfam | MCM OB domain | 329 | 456 | IPR033762 | - | |
| Cone14ag0637 | 950 | Pfam | Mini-chromosome maintenance protein 2 | 43 | 159 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 9 | 36 | - | - | |
| Cone14ag0637 | 950 | Pfam | MCM N-terminal domain | 230 | 323 | IPR027925 | - | |
| Cone14ag0637 | 950 | MobiDBLite | consensus disorder prediction | 56 | 75 | - | - | |
| Cone14ag0637 | 950 | Pfam | MCM P-loop domain | 497 | 719 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0637 | Cone-Chr14:3200945 | Cone3ag1220 | Cone-Chr3:30947681 | 2.78E-98 | dispersed | |
| Cone14ag0637 | Cone-Chr14:3200945 | Cone16ag0446 | Cone-Chr16:6781760 | 8.61E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone14ag0637 | K02540 | - | vvi:100266163 | 1554.27 |