Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0649 ATGCCATCTGGAGTAGTAGATGTAAAGGGATTGTCCCCGTCTTCTTACTTCTCTGAGGATGCACATCTTCCGAACGAGAGGCAGGTTGGATTTTGGAAGCCGTCTGATGTGCCCGATCACCATGGCATTGGCAAGTCAGTTGCTATGTCATCTCCGGAAAAAATTTCAGTGTCTGAATACCAGATAGTGAAATCGCTGGACCATCCCGATTCTCTCCTAATGCTAGACAAGAAAGTGAATGTCAACTCAAATAGAAGTGCTGTTGGAGCGGAGAGAAAAGCCAGACATACCATGACCTTTCTGAAACATATGGAGTTTGATTCAGGACCAAGATCTTCTTCTACTGTACAGCCAGGATCTTATTTTGGAAAAAGCGATGAAGTCAATATCATGGGTGGTCAGTATGAGAGTAGTCTCTTCTCGAGTTCTATGTCAGAGTTGTTTACTAGGAAGTTGAGATTATCCTCAGGAAACACTCTGTATGGCCATTCTGTTGATACTGTTGCATCTCACTATGAGGAAGAGGAACCTTTTGAATCACTTGAAGAGTTGGAAGCTCAAACCATTGGAAATCTGCTCCCTAATGACGACGATTTGCTTTCTGGTGTAACTGACAGGCTTGACTTTGTTTACCATTCCACTGGTGGGGATGATACTGAGGATTTAGACTTCTTTAGCAACATTGGAGGGATGGATTTGGGAGATGACGGGTTATCTGATGTGCAGAAGAATCTGGAATCTATTAGAAGAGTACCTAATGGTCAATTTGGGATGAATGGTTCAGTAGTTGGAGAACACCCTTTAGGCGAACATCCTTCTAGGACATTATTCGTTAGAAATATAAATAGCAATGTCGAAGATTCTGAATTGAGGACCTTATTTGAGCAATATGGAGATATTCGCACCCTCTATACAGCCTGCAAACATCGTGGATTTGTTATGATTTCCTATTATGATATTAGAGCAGCCAGAAATGCTATGAAATCTCTTCAGAATAAACCATTGAGGCGTAGAAAGCTTGACATTCATTACTCCATTCCAAAGGACAATCCTACAGAAAAAGATGTTAATCAAGGCAATCTTGTTGTCTTTAACCTTGATTCGTCAGTTTCAAACGATGAGCTCCGTCAGATCTTTGGTGCCTATGGAGAAATCAAGGAGCTTTGTGAAACCCCACACATAAGTCAACATAAGTTTGTAGAATATTATGATATCAGATCTGCAGAGGCAGCTCTGTGTGCATTAAATGAAAGTGATATAGCTGGCAAGCGGATTAAGGTTGAGCCAAGCCGTTCTGGTGGTCTGAGACCGAGTTTGGCACAACAGCTCCCTCCAGAGTTGGAGCAAGTAGAATTTGGCCTTTATCTACAGCAGAGTAGCCCTCCTGTTAGCTCAACTAGTGGTTTCTCCGTTCCAAATGGAGCAATTTTGTCTAGCAGTATTGAAAATAGATCTGTTTTTGGGCTACACTCTGGATTACGAGCTTCATCTTTGGATACTGCATTGCATCATGGGATATCTTCTAGTGTTCCTAATAATTTATCATCTCTGATGAGAGTGGAATCAATTAGAAACCAGTCTGTCTTCATGGACTCTGTTCACTCAGCTTCCCCGATTGAATATGGTAATCGAGGAGCACCTCCGCCATTTCATCCTCACTCACTTCCAGAATATCATGACAGCCTGAGTAACAATGTACACCAAAATTCTCCAGGCGCCATGCCTGGAAATCTTAGAGCACCAGATAGAATTGATAACAGACAACTCCATGGAACGAGCATGAATAGGCACTCAATTGATCTCAATGAAGGAGTTTTTGGTTCTGCTGGTACTGGGCCCCGCCCCCTTCCCGGACATCATTATAGATGGGGTAACTCGTTTCATCCTCAGTCTACTGGCATGGTCTGGCCGAACTCTCCAACATATGTGAATGGAATTCATTCAGCTCATCCTCCACCCAATCTTCATGGAGTTCCAAGAGGACCATCTCACCTTATGCATACAGTTTTACCCATTAGCAAACACCATGTGGAATCAGCTCCAGCAGTTAATCCTTCTCTGTGGGATAGGCAGCATGGTTATGCAGGGGAATTGTCCGAGGCCTCCGGTTTTCATCCAGGTTCTCTAGGGAGTATGAAGGTATCTAATAACTCACCGCATTCTCTGGATTTTGTCTCTCACAACTTTTCCCATGTGGGTGGAAATTGTGTGGATCTGCCTATCGCACAAAACAATGTGGGTCTACAAGCCCATCATCAGAGGTGCCTGATGTTTCCAGGGAGAGGCCAGATTCCTCCATTGGCAAGTTCCTTTGATCTAAATGAACGTGCAAGGATCCGTAGGAATGAAGTCAGCTCTAATCAGTCTGAAAACAAGAAACAGTATGAACTCGATATTGACCGCATCATGAGAGGAGATGACACTCGAACAACTCTAATGATAAAGAACATTCCTAACAAGTATACCTCAAAGATGCTTTTGGCTGCCATTGATGAACGCCATCGAGGAACTTATGACTTCATTTATCTACCAATTGACTTTAAGAACAAATGTAATGTGGGGTATGCATTCATCAACATGACTGAGCCTACCGGAATCATTCCGTTCTATCAGGCGTTTAACGGGAAAAAATGGGAGAAGTTTAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGCATACAAGGAAAGGCTGCTCTCATTGCTCACTTCCAAAATTCAAGTTTAATGAATGAGGACAAGCGATGCCGGCCAATTCTATTCAACACTGATGGTCCTAACGCAGGCGATCAGGTGCCCTTCCCAGTGGGTGTTAATGTTCGTGCTAGACCCGGAAAAGCACGAATGAATGCCCATGACCACGAGGAAAGCCTTGGTGAATATTCTGGACTGAGGGAAGACTTTTCTAACGGAGATTCATCCTTAGGCATTGCTGAGGATTTCGAGCCAGACACCTAA 2958 43.41 MPSGVVDVKGLSPSSYFSEDAHLPNERQVGFWKPSDVPDHHGIGKSVAMSSPEKISVSEYQIVKSLDHPDSLLMLDKKVNVNSNRSAVGAERKARHTMTFLKHMEFDSGPRSSSTVQPGSYFGKSDEVNIMGGQYESSLFSSSMSELFTRKLRLSSGNTLYGHSVDTVASHYEEEEPFESLEELEAQTIGNLLPNDDDLLSGVTDRLDFVYHSTGGDDTEDLDFFSNIGGMDLGDDGLSDVQKNLESIRRVPNGQFGMNGSVVGEHPLGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKSLQNKPLRRRKLDIHYSIPKDNPTEKDVNQGNLVVFNLDSSVSNDELRQIFGAYGEIKELCETPHISQHKFVEYYDIRSAEAALCALNESDIAGKRIKVEPSRSGGLRPSLAQQLPPELEQVEFGLYLQQSSPPVSSTSGFSVPNGAILSSSIENRSVFGLHSGLRASSLDTALHHGISSSVPNNLSSLMRVESIRNQSVFMDSVHSASPIEYGNRGAPPPFHPHSLPEYHDSLSNNVHQNSPGAMPGNLRAPDRIDNRQLHGTSMNRHSIDLNEGVFGSAGTGPRPLPGHHYRWGNSFHPQSTGMVWPNSPTYVNGIHSAHPPPNLHGVPRGPSHLMHTVLPISKHHVESAPAVNPSLWDRQHGYAGELSEASGFHPGSLGSMKVSNNSPHSLDFVSHNFSHVGGNCVDLPIAQNNVGLQAHHQRCLMFPGRGQIPPLASSFDLNERARIRRNEVSSNQSENKKQYELDIDRIMRGDDTRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTEPTGIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPVGVNVRARPGKARMNAHDHEESLGEYSGLREDFSNGDSSLGIAEDFEPDT 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3252699 3260201 - Conep14aG0066300.1 Cone14ag0649 452498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0649 985 SUPERFAMILY RNA-binding domain, RBD 811 896 IPR035979 GO:0003676(InterPro)
Cone14ag0649 985 CDD RRM1_MEI2_like 273 349 IPR034453 -
Cone14ag0649 985 MobiDBLite consensus disorder prediction 948 962 - -
Cone14ag0649 985 SMART rrm1_1 275 343 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 SMART rrm1_1 811 887 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 SMART rrm1_1 360 428 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 347 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 432 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 PANTHER RNA RECOGNITION MOTIF-CONTAINING 137 956 - GO:0045836(PANTHER)
Cone14ag0649 985 MobiDBLite consensus disorder prediction 948 985 - -
Cone14ag0649 985 CDD RRM3_MEI2_like 812 897 IPR034454 -
Cone14ag0649 985 SUPERFAMILY RNA-binding domain, RBD 271 432 IPR035979 GO:0003676(InterPro)
Cone14ag0649 985 Gene3D - 265 357 IPR012677 -
Cone14ag0649 985 Gene3D - 358 449 IPR012677 -
Cone14ag0649 985 Pfam RNA recognition motif 2 809 905 IPR007201 -
Cone14ag0649 985 Pfam RNA recognition motif 276 340 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 Pfam RNA recognition motif 361 426 IPR000504 GO:0003723(InterPro)
Cone14ag0649 985 FunFam Protein MEI2-like 1 358 453 - -
Cone14ag0649 985 FunFam MEI2-like protein 5 isoform 2 263 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0649 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0265 Cone-Chr13:1848616 Cone14ag0649 Cone-Chr14:3252699 1.11E-180 dispersed
Cone14ag0649 Cone-Chr14:3252699 Cone8ag1573 Cone-Chr8:11727520 8.03E-210 dispersed
Cone14ag0649 Cone-Chr14:3252699 Cone15ag0659 Cone-Chr15:3452258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46