Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0656 ATGGGTTCAAGCACCATACCTTCTCTTCTGCCATGGAAGAAAACCTTGGCATTTGCCATAGTTCTGCTTCACTTATCTTATTTGACAAATGCAGAGCCATCTCTTTTTTCTCAGCTTGATAAAATTTCTAAGCTTCCTGGTCAGCCCGAAGTGGAGTTCGGTCAGTATTCGGGTTACGTGACCGTTGATGAGAGGAAACAGAGAGCTCTGTTTTACTACTTTGCTGAAGCAGAAACAGATCCGGCTTCTAAGCCTCTTGTTCTATGGCTCAATGGAGGGCCTGGCTGTTCTTCTCTAGAAGCAAACATGTTGTATTTGGAAAGTCCAATTGGAGTTGGGTTTTCTTATTCAACTGATTCGTCTTCGTATGCTGTTAATGACAAAATCACTGCCAGGGACAATCTAGTGTTCTTGCAAAAGTGGTTCCTTAAATTCCCTCAATACTGGAACAGAAGTTTGTACATTACTGGAGAAAGCTATGCCGGCCACTATGTTCCCCAGCTAGCCGAACTCATGCTCCAACCGAACAATCAAGAAAACCAGTTCAATTTAAAAGGCATTGCTATAGGCAATCCCGTCCTTGAATTTTCGACTGATTTCAATTCTAGGGCTGAATTTCTATGGTCTCATGGACTAATATCAGATTTCACATATAAAATGTTCACTTCCTCGTGTAACTATTCTCGATATGTAAGTGAGTACTACAGAGGTTCTGTTTCGAGTGTTTGTTCAAGAGTGATGAGCCAAGTTACAAGGGAAACAAGTCGGTTTGTTGACAAGTACGATGTTACCCTTGATGTTTGCATTTCTGCTGTGTTTTCTCAATCCCAAACTCTCACCCCCAAACAAGTTACGGAAACAATAGATGTCTGTGTGGAAGATGAGACGGTTAATTATCTAAACAGGAGAGATGTACAGAAGATGCTTCATGCACGTCTTGTCGGCGTGCGGCGATGGTCTGTTTGCAGCAGTGTCCTAGATTATGAGCTTCTTGACTTGGAGATACCGACGATCACAGTTGTCGGAAATCTTGTCAAGGCAGGAATTCAAGTTTTGGTTTACAGTGGGGATCAAGATTCTGTAATTCCGTTGACAGGAAGTCGGAAGTTGGTTCACGGGCTAGCAGAGGAACTAGGACTGAAGACGAGTGTGCCGTATAGAGTGTGGTTTGAGGGTCAGCAGGTGGGTGGATGGACTCAAGTTTATGGGAATATACTGTCCTTTGCCACCATTAGAGGAGCTTCCCATGAAGCTCCATTCTCTCAGCCTCAAAGATCCCTTGTTTTGTTCAAGTCCTTCTTGGAAGCTCGACCTCTCCCAGAAGCCTTCTAA 1332 43.62 MGSSTIPSLLPWKKTLAFAIVLLHLSYLTNAEPSLFSQLDKISKLPGQPEVEFGQYSGYVTVDERKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSLEANMLYLESPIGVGFSYSTDSSSYAVNDKITARDNLVFLQKWFLKFPQYWNRSLYITGESYAGHYVPQLAELMLQPNNQENQFNLKGIAIGNPVLEFSTDFNSRAEFLWSHGLISDFTYKMFTSSCNYSRYVSEYYRGSVSSVCSRVMSQVTRETSRFVDKYDVTLDVCISAVFSQSQTLTPKQVTETIDVCVEDETVNYLNRRDVQKMLHARLVGVRRWSVCSSVLDYELLDLEIPTITVVGNLVKAGIQVLVYSGDQDSVIPLTGSRKLVHGLAEELGLKTSVPYRVWFEGQQVGGWTQVYGNILSFATIRGASHEAPFSQPQRSLVLFKSFLEARPLPEAF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3291606 3294106 - Conep14aG0067000.1 Cone14ag0656 452505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0656 443 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 432 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0005773(PANTHER)|GO:0006508(InterPro)
Cone14ag0656 443 ProSitePatterns Serine carboxypeptidases, serine active site. 155 162 IPR018202 GO:0004185(InterPro)
Cone14ag0656 443 Gene3D - 291 327 - -
Cone14ag0656 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 116 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone14ag0656 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 166 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone14ag0656 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 406 419 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone14ag0656 443 FunFam Carboxypeptidase 98 440 - -
Cone14ag0656 443 Pfam Serine carboxypeptidase 100 435 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone14ag0656 443 Gene3D - 338 436 - -
Cone14ag0656 443 SUPERFAMILY alpha/beta-Hydrolases 44 439 IPR029058 -
Cone14ag0656 443 Gene3D alpha/beta hydrolase 102 270 IPR029058 -
Cone14ag0656 443 Gene3D alpha/beta hydrolase 37 101 IPR029058 -
Cone14ag0656 443 ProSitePatterns Serine carboxypeptidases, histidine active site. 406 423 IPR033124 GO:0004185(InterPro)
Cone14ag0656 443 FunFam Carboxypeptidase 337 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0656 K16297 - - vvi:100255776 706.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0254 Cone-Chr13:1742222 Cone14ag0656 Cone-Chr14:3291606 9.06E-185 dispersed
Cone13ag0634 Cone-Chr13:6398076 Cone14ag0656 Cone-Chr14:3291606 1.21E-181 dispersed
Cone14ag0656 Cone-Chr14:3291606 Cone20ag0399 Cone-Chr20:1935815 1.23E-121 dispersed
Cone14ag0656 Cone-Chr14:3291606 Cone15ag0666 Cone-Chr15:3503525 1.96E-292 wgd
Cone14ag0656 Cone-Chr14:3291606 Cone17ag0367 Cone-Chr17:1711449 9.12E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0656 Cone15ag0666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126