Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0657 ATGGGGAAGGAAGAAAGTTGTAAAGTAGATGTAGAAGAAGGTGAAATTTCCGATACAGCATCAATGGTGGAGATAAGTGAAGAGGTTTTTAAGATGCAGGAAAGTGCGGCGGCGGCTATGATGACGGCTCCGAAGGAGTCTAATCGGGAAGCTAGGGTTTGGACGATGCGTGATCTGTATAAAACCTACCCGACGATTTGTAGGGGTTATCCGTCGGGTTTGTATAACCTTGCTTGGGCGCAGGCAGTGCAGAATAAACCTCTAAATGATCTCTTTGTTATGGATGTTGATCCTGAGGAGAACTCAAATAGCAAGGAAGATAATAAAAATGAGAGAGACGCTGATGATAATAAAGTCGTGCTTGTTGATAGTGGTGATGAAATAGATGTTAAGATTGTGGATATTGAGAAAGAAGAAGGGGAATTGGAGGAAGGTGAGATTGACTTTGATTCCGAGCCAGCTGATGAGGAGATTGGGGTTTTTGGTTCGAATCAAAACAAGTTTGAGAAGCAAGTGAATGTGATTAGAGAAGCGTTAGAGAGTGTTACCCTGAATGATGCAGAGAAATCATTTGAAGATACGTGTTCGAGACTGTATCGGACTTTTGAGAATTTGAAGGAATTCCTTTCAGGAAACCAATCTCCCGGAAGTGATTCTCTCATTCAATTGTCATTTACTGCTGTTCAAGTGGCCAATTCTGTCTTCTCCTCCATGAATCATAATGAGAAGGAAGAGAATAAGCGCCAGTTTTCGAGGTTACTTTCTTTTGTAAAAGAACACACTCCTTCTCTGTTTTCCCCCGACCAGAGGAAAGAGATAGAGGCGATGACGCAGTCCCTGGATTCTTTAGATCTTGTGCCAATGGTGAAAGAGGATCAGGTGATCATTGGGATGGATGTTAAGGATTCTGGTGATTTTCCTGCAATTGGGAGTCAAGATATAACTTCTTCAACTAAACTTCCTTTGGACTTTATAGCTAATGTATCGGTGCTACAAAATAACCGACAACTCACATCAGAAGATCTGAAATCAGGGGTATCTAGTTTTAAGGGTAGAGGGATTCTCCTTCCCTTGTTGGACCTTCACAAAGATCATGATGAAGACAGTTTACCATCCCCTACACAAGCAACAGTGTCATCTTCTCCTTTTCATAAAGCATTGATTAGTGTAGATGGGATGGTAAAATCAAGCCCAGCCCCTGCTAAGGAGGCTCCCAACTCAGTTGCTTCTAGATTGCATCCTTATGAAACTGATGCATTGAAAGCCGTTTCTTTCTATCAACAAAAGTTTGGTCGAAGTTCTTTTTCTATGCATGATAGACTTCCTAGCCCAACACCTTCAGAGGAAGGCGATAATAGAGGTGATGATGTTAGTGGTGAGGTATCTAGTGCACCCATTGTAGGAAACTTAAAGCCGTCAAATCAGCCAGTTATGGGGCATCCTGTAGTGAATTCTGTGCCAAGCACAACTTCTGTTTTTTCTTCTAATGTAGACAGCTCTAGCACACAAGGGTTGGTTGCTACTAGAAATGCCGCACCTACAGGTTCTGCATCTAATCCTACCATGAAAGTTTCCGCAAAAAGTAGAGATCCTAGGCTTCGATTTGCCAATTCTGATTCTAGTGTTACTAAAACAGATCCTGTTAGACCTGTAAGTTCAAGGAAGCAAAAGATTGATGAGGAGACCAATTTAGATGGTCCTTCATTGAAAAGGAAGAGGAACGGATTGGAGAGTTGCACTGGAACAGGTGGTTGGTTGGAAGATTCTCTAGTGGTTGGTCCTCAACTGATGAGTGGGAATCCCTTCAAGGAGAATGCAGAAACTGATATGAGAAAAACGGCATCAGTTGCGTATCCTCCTGATACCAGTAGTGGGAATCCCAACGTTGCAAATACTGGAAATGAGAAGGTGCCAGTAACTATTGGTAGCAGCACTGCGTCCTTGCATGCTTTATGGAAAGATATTCCTGTGAATCCAACTATGCTATTTAATATTTTAAAGATGGGACAGCAACATCTATTAGCAGCAGAATCTCAGCAGAAGTCTGCTGAACAAGGAAAAAGTGGAGCAAATTCTCCAAGTCTGGATTCAATACACAGCTTAGCTCCATTGGTAAATGTTAATCCCTTCATTACCCCAGGGAATTTGCAGAAACTAGCTGGACCACTGAAAGTTCCTTCACAAGTAGCTCCACTGAACCTGCAAGAAGATACGGGAAAAGTTCGCATGAAACCTCGTGACCCTCGTCGTATCCTTCATGGTAATGCACTTCAAAAGTCTGGGAGCTTGGGAAATGAGCAGTTCAAAACTATTTTATCCAGTGCCTTAAGTGAGCAGGGAAATAAGGATAATTTCAATGGCCTAAATCAAGATGGTCAAGGAGATACAAAATTGATGCTTTCTCAAACAGTTCCCCCACTTGATATTACTAGGCAGTTCACCAAAAATCTTAAAAATATCGCAGATATCATGTCTGTTTCCCAAGCACCAACTACACCTAGTCTTTCAACCCAACCAGCTCCGATTAAGGCAGACAGAGTGGACATAAAGACATCAAGCTCTGACGAACAGCGGCCCATAACAAATTCAGTAACTGAAGTAGGTGTAGCAGCAGGTCCCTCATGCCCACAGGACATGTGGGGAGATGTGGAACATTTATTTGAAGGATATGATGACCAGCAGAAAGCTGCCATACAGAGAGAGAGGGCAAGGAGAATAGAAGAACAAAAGAAAATGTTTGCAGCTCGCAAACTCTGCCTTGTCTTGGATCTTGATCACACACTTCTTAATTCAGCCAAGTTTATGGAAGTGGATCCAGTGCACGATGAGATCTTGAGAAAAAAAGAGGAACAAGATCGTGAAAAACAGCAGAGGCATCTTTTCCGTTTTGCCCATATGGCAATGTGGACCAAACTGCGGCCAGGAATCTGGAATTTTTTGGAAAAGGCTAGCAAGCTCTACGAACTGCATTTATACACTATGGGTAACAAGCTATATGCTACAGAGATGGCCAAAGTGCTAGATCCTAATGGGGTTCTCTTTGCTGGACGGGTTATTTCAAAGGGTGATGATGGTGACCCCTTTGATGGTGATGAGAGAGTTCCGAAGAGTAAGGATCTGGAAGGGGTATTGGGCATGGAATCGGGTGTTGTAATTATTGATGATTCTATCAGGGTCTGGCCACATAATAAATTGAACCTGATTGTTGTTGAAAGGTATATTTACTTTCCCTGTAGTAGACGCCAATTTGGGCTTCAGAGGCCTGCTCTTCTCGAGATTGATCACGATGAGAGGCCTGAAGATGGTACTTTAGCATCCTGTTTGTCGGTTATTGAGAGATTACACCATATATTTTTCTCCCACCACGCATTAGATGAAGTAGACGTCAGAAATATCCTGGCCTCAGAGCAACGGAAAATATTGGGTGGATGTCGAATAGTATTTAGCAGGGTTTTTCCGGTGGGTGAGGCTAATCCCCACCTGCATCCGTTATGGCAAACAGCAGAACAATTTGGTGCTGTTTGCACGAACCAGATTGATGATCAGGTCACCCATGTGGTTGCCATTTCCCCTGGAACTGATAAGGTGAATTGGGCTCTGGCCTCCGGAAGATTCGTTGTACACCCTGGCTGGGTGGAGGCATCTGCTTTGCTATACAGGAGGGCAAATGAGCAAGACTTTGCCATTAAACCACAACAAACACCATCCTAA 3711 43.12 MGKEESCKVDVEEGEISDTASMVEISEEVFKMQESAAAAMMTAPKESNREARVWTMRDLYKTYPTICRGYPSGLYNLAWAQAVQNKPLNDLFVMDVDPEENSNSKEDNKNERDADDNKVVLVDSGDEIDVKIVDIEKEEGELEEGEIDFDSEPADEEIGVFGSNQNKFEKQVNVIREALESVTLNDAEKSFEDTCSRLYRTFENLKEFLSGNQSPGSDSLIQLSFTAVQVANSVFSSMNHNEKEENKRQFSRLLSFVKEHTPSLFSPDQRKEIEAMTQSLDSLDLVPMVKEDQVIIGMDVKDSGDFPAIGSQDITSSTKLPLDFIANVSVLQNNRQLTSEDLKSGVSSFKGRGILLPLLDLHKDHDEDSLPSPTQATVSSSPFHKALISVDGMVKSSPAPAKEAPNSVASRLHPYETDALKAVSFYQQKFGRSSFSMHDRLPSPTPSEEGDNRGDDVSGEVSSAPIVGNLKPSNQPVMGHPVVNSVPSTTSVFSSNVDSSSTQGLVATRNAAPTGSASNPTMKVSAKSRDPRLRFANSDSSVTKTDPVRPVSSRKQKIDEETNLDGPSLKRKRNGLESCTGTGGWLEDSLVVGPQLMSGNPFKENAETDMRKTASVAYPPDTSSGNPNVANTGNEKVPVTIGSSTASLHALWKDIPVNPTMLFNILKMGQQHLLAAESQQKSAEQGKSGANSPSLDSIHSLAPLVNVNPFITPGNLQKLAGPLKVPSQVAPLNLQEDTGKVRMKPRDPRRILHGNALQKSGSLGNEQFKTILSSALSEQGNKDNFNGLNQDGQGDTKLMLSQTVPPLDITRQFTKNLKNIADIMSVSQAPTTPSLSTQPAPIKADRVDIKTSSSDEQRPITNSVTEVGVAAGPSCPQDMWGDVEHLFEGYDDQQKAAIQRERARRIEEQKKMFAARKLCLVLDLDHTLLNSAKFMEVDPVHDEILRKKEEQDREKQQRHLFRFAHMAMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPNGVLFAGRVISKGDDGDPFDGDERVPKSKDLEGVLGMESGVVIIDDSIRVWPHNKLNLIVVERYIYFPCSRRQFGLQRPALLEIDHDERPEDGTLASCLSVIERLHHIFFSHHALDEVDVRNILASEQRKILGGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTNQIDDQVTHVVAISPGTDKVNWALASGRFVVHPGWVEASALLYRRANEQDFAIKPQQTPS 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3304769 3310904 - Conep14aG0067100.1 Cone14ag0657 452506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0657 1236 ProSiteProfiles FCP1 homology domain profile. 913 1093 IPR004274 -
Cone14ag0657 1236 PANTHER RNA POLYMERASE II CTD PHOSPHATASE 363 1231 IPR039189 GO:0008420(InterPro)|GO:0008420(PANTHER)|GO:0070940(PANTHER)
Cone14ag0657 1236 MobiDBLite consensus disorder prediction 509 576 - -
Cone14ag0657 1236 MobiDBLite consensus disorder prediction 535 549 - -
Cone14ag0657 1236 SMART BRCT_7 1138 1219 IPR001357 -
Cone14ag0657 1236 NCBIfam FCP1-like phosphatase, phosphatase domain 913 1076 IPR011947 GO:0004721(InterPro)|GO:0005634(InterPro)
Cone14ag0657 1236 SUPERFAMILY HAD-like 907 1082 IPR036412 -
Cone14ag0657 1236 CDD HAD_FCP1-like 917 1070 - -
Cone14ag0657 1236 ProSiteProfiles BRCT domain profile. 1136 1229 IPR001357 -
Cone14ag0657 1236 Pfam NLI interacting factor-like phosphatase 918 1074 IPR004274 -
Cone14ag0657 1236 FunFam RNA polymerase II C-terminal domain phosphatase-like 3 902 1139 - -
Cone14ag0657 1236 MobiDBLite consensus disorder prediction 435 461 - -
Cone14ag0657 1236 SMART forpap2 916 1080 IPR004274 -
Cone14ag0657 1236 Pfam BRCA1 C Terminus (BRCT) domain 1166 1215 IPR001357 -
Cone14ag0657 1236 MobiDBLite consensus disorder prediction 676 695 - -
Cone14ag0657 1236 MobiDBLite consensus disorder prediction 550 572 - -
Cone14ag0657 1236 Gene3D - 902 1139 IPR023214 -
Cone14ag0657 1236 FunFam RNA polymerase II C-terminal domain phosphatase-like 3 1140 1229 - -
Cone14ag0657 1236 CDD BRCT_CTDP1 1128 1224 - -
Cone14ag0657 1236 MobiDBLite consensus disorder prediction 509 525 - -
Cone14ag0657 1236 SUPERFAMILY BRCT domain 1140 1231 IPR036420 -
Cone14ag0657 1236 Gene3D BRCT domain 1140 1229 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0657 K18999 - - csv:101205188 1293.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0657 Cone-Chr14:3304769 Cone3ag0704 Cone-Chr3:3602543 1.99E-71 dispersed
Cone14ag0657 Cone-Chr14:3304769 Cone15ag0667 Cone-Chr15:3512628 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0657 Cone15ag0667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005044 3 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41