Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0675 ATGCCAGCATTGTTGAAAATGAAAAGATTTTTTGATCTGGGTCTGTTCATCTTCATCGTCTTCATCGTCTTCATCGTTCTTTCGCCTCTGTTTGTGAGATCTCTAACTCCATATCTAAACGACGACGTTTTGGGCCTAATAGTGTTCAAAGCCGACATTCAAGATCCAAAAGGAAAGCTTTCATCTTGGAACGAAGATGATGACAGCCCCTGTAAATGGGCTGGTGTAAAATGCAACCCTAGATCCAACAAGGCCATAGAGCTCAACCTAGACAACTTTTCACTATCAGGTCATCTAGGCCGAGGCCTGTTACAGTTACAGTCGTTGCGGTTTCTCTCTCTCTCTAACAACAATCTTTCCGGAACCATCAGCCCCAACATTGCTCAGGTCCAGAACCTTCGGGTCATGGACTTGAGTGGGAACAGCCTCTCCGGGCCCATACCCGACAGTTTCTTTAACCAATGTGGGTTGTTAAGAACAATATCTTTGGGTAAGAACAAATTTTCGGGTGAAATCCCGAGTAGTTTGGCTTTTTGTTCAAGTCTTTCTTCACTTGATTTGTCTGGTAATGTTTTTTCGGGCTCCGTACCTTCCGGAATATGGTCTTTGACTGGTCTTCGGTTTCTGGATTTATCTGATAACATGTTAGAGGGTGAAATCGGAAATGAGATTGAAGGCATGAAGAATCTGCGAGCTATTGATTTGAGTAAGAATCAGTTTTCCGGGCAAGTCCCGGACGGAATTGGAAGTTGCTTGCTCATGAGGTCTATTGATCTTAGTGAGAATTCTTTTTCTGGGAATTTACCTGAGACAATGCAAAAACTTGCTCTTTGTGATAGTTTGAATTTGCATGGGAATTCATTTGATGGTCAGATTCCATATTGGATCACAGAAATGAAAAGCCTAGAGGCTTTGGATTTGTCAGGAAATAGATTTTCGGGTCCGGTTCCGAGTTCAATTGGGAATCTTCAGAATCTGAAGGTGTTGAATTTTTCTTCAAATGCATTGACTGGTGATCTCCCTGGATGGCTTTATAAATTGGTTTCACAGACTGATGTGCTTATGGAGAGTGAGCAAAGCGGAAGCACTAATCTTCAAGTCTTGGATTTATCTCAGAATGAGTTGTCGGGTGAGATTGCTCCGGAAATTCAGGTTATAGACAGCTTGCAGGTTTTGAACTTGTCTGGAAACTCTCTTCTTGGCCATATTCCAGAAAGTGTTGGAGATTTGAAGGCCTTGAGTATTCTTGATTTGAGTAGGAATAAGCTAAATGGAAGCATACCAAAAGGGATTGGAGGAGCTGTATCTTTGAAAGAACTGAGGCTCGAGATGAACTTTCTAGTTGGTGAAATTCCGTCTTCGATCGGGAATTGTTCTTCACTAACTACTCTGATCATATCACACAACAAAGTATCGGGTCCCATACCAACTGCTTTATCAAAACTCTCGGATCTTCGACATGTTGACTTATCATCCAACAACCTAAATGGAATTCTCCCGAAACAGTTAGCCAACCTCCCGAACCTTCTAACTTTTAACATCTCTCACAACAATCTCCACGGAGAACTACCTTCCGGAGGCTTCTTCAACACCATCTCACCTTCCTCAGTTTCCGGAAACCCCTTCCTATGTGGGTCCGTTGTCAAAAAGTATTGCCCTGCTGTCCTTCCCAAACCCATCGTTCTTAACCCCAACTCCTCCTCCGACCCCACCTCTAGCACTTCATTACCCACAAAACTCGGCCACAAAAGAATCATCCTTAGCATCTCCGCCCTCATTGCTATAGCCGCAGCTTCTGTCATCATTATCGGCGTAATCGCCATAACCGTCCTTAACCTTCATGTCCGGTCAACCACTTCTCAGTCCCGAGCAGCCCTTGCTTTATCTAGTTGTGAAGACTATAGTCGGTCCCCCACAACTGACGCCAATTCTGGAAAGCTAGTAATGTTTTCAGGCGACCAGGACTTCAGTACGGGAGCCCATGCTCTATTGAACAAGGATTGTGAGCTCGGGCGAGGTGGGTTTGGAACAGTCTACCGGACCGTTCTAGCCGACGGCTGCCCAGTTGCAATCAAGAAGCTCACCGTCTCAAGCCTTGTCAAATCCCAAGAAGATTTCGAACGGGAAGTGAAGAAGCTGGGAAAAGTTAGGCATCAAAATTTGGTTGCTCTGGAAGGTTATTACTGGACCCCATCACTACAACTTCTTATCTACGAATTCGTCTCGGGAGGTAGTTTATACAAGCAACTCCACGAACAAACTGGACCAAACATCCTTTCTTGGAATGAGCGGTTCAATATAATTCTCGGGACGGCTAAGAGCTTGACCCACTTGCACCAAAAGAACATAATCCACTACAATATCAAATCGAGCAATGTCTTGATAGACAGCTTGGGCGAGCCCAAGGTTGGAGATTATGGGCTGGCCCAGTTGTTGCCGATGCTGGACCGGTACGTTTTGAGCAGCAAGATTCAGAGCGTTCTTGGCTACATGGCTCCAGAATTTGCTTGCAGAACGGTTAAGATAACGGAGAAATGTGATGTGTACGGGTTTGGGGTTTTGGTTCTAGAAGTGGTTACGGGTAAGAGACCGGTGGAGTACATGGAAGATGATGTGGTGGTGCTTTGTGATATGGTGAGAGGAGCGCTTGAAGAGTGTAGGGTAGAGGAATGTATTGATGCGAGGCTTCAGGGGAATTTTCCAGTTGAGGAGGTAATTCCGGTCATGAAGCTGGGTTTGATTTGTACGTCTCAAGTGCCGTCGAATCGGCCAGATATGGGAGAGGTGGTTAATATATTGGAGCTAATCAGGTGTCCTTCTGAAAGCCAAGAAGAGTGA 2838 45.0 MPALLKMKRFFDLGLFIFIVFIVFIVLSPLFVRSLTPYLNDDVLGLIVFKADIQDPKGKLSSWNEDDDSPCKWAGVKCNPRSNKAIELNLDNFSLSGHLGRGLLQLQSLRFLSLSNNNLSGTISPNIAQVQNLRVMDLSGNSLSGPIPDSFFNQCGLLRTISLGKNKFSGEIPSSLAFCSSLSSLDLSGNVFSGSVPSGIWSLTGLRFLDLSDNMLEGEIGNEIEGMKNLRAIDLSKNQFSGQVPDGIGSCLLMRSIDLSENSFSGNLPETMQKLALCDSLNLHGNSFDGQIPYWITEMKSLEALDLSGNRFSGPVPSSIGNLQNLKVLNFSSNALTGDLPGWLYKLVSQTDVLMESEQSGSTNLQVLDLSQNELSGEIAPEIQVIDSLQVLNLSGNSLLGHIPESVGDLKALSILDLSRNKLNGSIPKGIGGAVSLKELRLEMNFLVGEIPSSIGNCSSLTTLIISHNKVSGPIPTALSKLSDLRHVDLSSNNLNGILPKQLANLPNLLTFNISHNNLHGELPSGGFFNTISPSSVSGNPFLCGSVVKKYCPAVLPKPIVLNPNSSSDPTSSTSLPTKLGHKRIILSISALIAIAAASVIIIGVIAITVLNLHVRSTTSQSRAALALSSCEDYSRSPTTDANSGKLVMFSGDQDFSTGAHALLNKDCELGRGGFGTVYRTVLADGCPVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEQTGPNILSWNERFNIILGTAKSLTHLHQKNIIHYNIKSSNVLIDSLGEPKVGDYGLAQLLPMLDRYVLSSKIQSVLGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEECRVEECIDARLQGNFPVEEVIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSESQEE 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3469790 3472984 - Conep14aG0069000.1 Cone14ag0675 452524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0675 945 Pfam Protein tyrosine and serine/threonine kinase 666 931 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag0675 945 SMART LRR_typ_2 227 251 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 203 226 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 482 505 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 323 347 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 299 322 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 506 530 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 410 434 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 386 409 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 106 129 IPR003591 -
Cone14ag0675 945 SMART LRR_typ_2 130 154 IPR003591 -
Cone14ag0675 945 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Cone14ag0675 945 Pfam Leucine Rich Repeat 206 226 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine Rich Repeat 255 275 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine Rich Repeat 108 128 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine Rich Repeat 364 384 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine Rich Repeat 229 251 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Gene3D Ribonuclease Inhibitor 359 555 IPR032675 -
Cone14ag0675 945 PRINTS Leucine-rich repeat signature 365 378 - -
Cone14ag0675 945 PRINTS Leucine-rich repeat signature 410 423 - -
Cone14ag0675 945 ProSitePatterns Protein kinases ATP-binding region signature. 670 693 IPR017441 GO:0005524(InterPro)
Cone14ag0675 945 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 741 942 - -
Cone14ag0675 945 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 296 556 - -
Cone14ag0675 945 Gene3D Transferase(Phosphotransferase) domain 1 741 945 - -
Cone14ag0675 945 FunFam Inactive leucine-rich repeat receptor-like protein kinase 198 294 - -
Cone14ag0675 945 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine rich repeat 301 349 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine rich repeat 132 190 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 Pfam Leucine rich repeat 388 445 IPR001611 GO:0005515(InterPro)
Cone14ag0675 945 SUPERFAMILY L domain-like 63 344 - -
Cone14ag0675 945 ProSiteProfiles Protein kinase domain profile. 664 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0675 945 SUPERFAMILY Protein kinase-like (PK-like) 667 937 IPR011009 -
Cone14ag0675 945 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 358 933 IPR051716 -
Cone14ag0675 945 Gene3D Ribonuclease Inhibitor 195 358 IPR032675 -
Cone14ag0675 945 CDD STKc_IRAK 670 936 - -
Cone14ag0675 945 Gene3D Ribonuclease Inhibitor 40 194 IPR032675 -
Cone14ag0675 945 SMART LRR_sd22_2 410 433 - -
Cone14ag0675 945 SMART LRR_sd22_2 482 508 - -
Cone14ag0675 945 SMART LRR_sd22_2 362 391 - -
Cone14ag0675 945 SMART LRR_sd22_2 299 325 - -
Cone14ag0675 945 SMART LRR_sd22_2 203 226 - -
Cone14ag0675 945 SMART LRR_sd22_2 106 129 - -
Cone14ag0675 945 FunFam Leucine-rich repeat receptor-like protein kinase 39 197 - -
Cone14ag0675 945 Gene3D Phosphorylase Kinase; domain 1 655 740 - -
Cone14ag0675 945 SUPERFAMILY L domain-like 280 545 - -
Cone14ag0675 945 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 658 740 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1451 Cone-Chr13:10386418 Cone14ag0675 Cone-Chr14:3469790 3.87E-200 dispersed
Cone14ag0675 Cone-Chr14:3469790 Cone19ag1453 Cone-Chr19:9435329 7.06E-208 dispersed
Cone18ag0894 Cone-Chr18:6312411 Cone14ag0675 Cone-Chr14:3469790 4.76E-106 transposed
Cone10ag0838 Cone-Chr10:4250465 Cone14ag0675 Cone-Chr14:3469790 1.87E-48 wgd
Cone14ag0675 Cone-Chr14:3469790 Cone15ag0686 Cone-Chr15:3682084 2.08E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82090 PF04727 ELMO_CED12 6.80E-51 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0675 - - - 0.0