Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0680 ATGGCGGCTAAGAAACTCTCCGACTCGTTCTCCAAGATGATGATGGGCGAGGTTCAGAAATGGGGTTGCATGAAGCAGACAGGCGTCAGCTTGCGCTACATGATGGAGTTTGGATCCAAGCCAACCGAGCGCAACCTCCTCATCGCCGCCGCCTTCCTCCACAAGGAGCTCCCCATTCGCATCGCCAGGCGAGCTATCGAGCTCGACTCCCTCCCTTACGGCCTCTCTGAAAAGCCTGCCGTTTTAAAGGTCCGAGACTGGTATTTAGATTCATTTCGTGATCTACGGTCCTTTCCTGAGATCAAGGATTCACATGACGAGAAGGAATTCACACAGATGATCAAGGCGATTAAGGTGAGACACAACAATGTGGTCCCCACCATGGCTCTGGGTGTTCAACAGTTGAAGAAGAGCATGAACCGTCGGATAGTTTGCGAAGATCTGGATGAAATTCATCAGTTTCTGGACCGGTTTTACATGTCCAGAATCGGAATCCGGATGCTTATCGGGCAGCACGTGGAATTGCATAATCCAAATCCGCCACCTCACTGCATCGGGTACATTCATACAAAAATGTCCCCCGTGGAGGTTGCTCGGAACGCCATCCAGGATGCTCGTGCCATTTGCTTTCGGAAATACGGCTCTGCACCAGAAGTTACCATATACGGAGATCCGAGCTTCACATTTCCGTATGTTCCGTCACACTTGCATCTGATGGTTTTTGAGCTTGTAAAGAACTCATTGCGTGCGGTGCAAGAGCGGTTCATGGATTTGGACAAGGTGGCGCCACCTGTCAGGATAATAGTGGCGGAAGGGATCGAGGATGTGACTATTAAGGTCTCTGACGAGGGTGGAGGGATTAGAAGAAGTGATTTACCAAAAATATTTACGTATCTTTACAGCACTGCAAGGAATCCATTGGATGATGAAGAGGAGTTGAATAGTAGTGATCCAGATACGGTGACCACTATGGCTGGGTATGGGTATGGGCTTCCGATCAGCCGATTGTATGCACGCTATTTCGGAGGGGATATGCAGATCATTTCCATGGAAGGATATGGGACTGATGCATATCTGCACTTGTCCCGGCTAGGCGATTCGCAAGAACCTCTGCCGTAG 1119 49.78 MAAKKLSDSFSKMMMGEVQKWGCMKQTGVSLRYMMEFGSKPTERNLLIAAAFLHKELPIRIARRAIELDSLPYGLSEKPAVLKVRDWYLDSFRDLRSFPEIKDSHDEKEFTQMIKAIKVRHNNVVPTMALGVQQLKKSMNRRIVCEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIHTKMSPVEVARNAIQDARAICFRKYGSAPEVTIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVQERFMDLDKVAPPVRIIVAEGIEDVTIKVSDEGGGIRRSDLPKIFTYLYSTARNPLDDEEELNSSDPDTVTTMAGYGYGLPISRLYARYFGGDMQIISMEGYGTDAYLHLSRLGDSQEPLP 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3512390 3514407 - Conep14aG0069500.1 Cone14ag0680 452529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0680 372 SMART HKATPase_4 231 365 IPR003594 -
Cone14ag0680 372 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 17 179 IPR036784 -
Cone14ag0680 372 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 189 361 IPR036890 -
Cone14ag0680 372 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase mitochondrial 191 371 - -
Cone14ag0680 372 PANTHER PYRUVATE DEHYDROGENASE KINASE 12 371 IPR039028 GO:0004672(InterPro)|GO:0004740(PANTHER)|GO:0005739(PANTHER)|GO:0006468(PANTHER)|GO:0010906(PANTHER)
Cone14ag0680 372 Gene3D - 4 183 IPR036784 -
Cone14ag0680 372 CDD HATPase_PDK-like 193 362 - -
Cone14ag0680 372 ProSiteProfiles Histidine kinase domain profile. 233 365 IPR005467 -
Cone14ag0680 372 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase, mitochondrial 7 183 - -
Cone14ag0680 372 Gene3D - 191 371 IPR036890 -
Cone14ag0680 372 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 29 189 IPR018955 -
Cone14ag0680 372 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 233 361 IPR003594 -
Cone14ag0680 372 PRINTS Bacterial sensor protein C-terminal signature 349 362 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone14ag0680 372 PRINTS Bacterial sensor protein C-terminal signature 325 343 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone14ag0680 372 PRINTS Bacterial sensor protein C-terminal signature 276 290 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0680 K00898 - - rcu:8261345 646.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0595 Cone-Chr16:7749047 Cone14ag0680 Cone-Chr14:3512390 5.97E-232 transposed
Cone14ag0680 Cone-Chr14:3512390 Cone15ag0692 Cone-Chr15:3731348 2.45E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g256 . Blo12g00373 Bda03g00837 . Bpe04g00792 . Bma04g00735 . . . . Cma14g01560 . Car14g01375 . . Cpe03g01304 Bhi01g01126 Tan10g1120 . . Hepe05g1346 . . . . . . . . . Cone14ag0680 Cone15ag0692 . . Lsi05g01389 . . Cme06g00829 . . . . . . . . . . Cmo14g01595 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003282 1 3 1 1 1 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 2 1 2 3 2 49