Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0685 ATGGCCGAGAGTAGAGGATATGTTCCAATTCAACATTTAGACCTTGTACAAATACTACAGGAAGCTCAGCATCGATGGCTCCGACCAACTGAAATCTGTGAGATACTTCGCAACCACAAAAAATTCCAGCTAACACCAGATCCCCCAATTCAACCTCCAGCTGGTTCTTTGTTCTTATTTGATCGGAAAGCTCTTCGATATTTTCGTAAGGATGGCCATAGATGGAGAAAGAAAAAAGATGGAAAAACTGTCAAAGAAGCGCATGAAAAGTTAAAGGCTGGTAGTGTGGATGTTCTCCATTGTTACTATGCCCATGGGGAAGATAATGAGAACTTCCAGAGACGAAGTTATTGGATGCTTGATAGGCAATTGGAGCACATAGTTCTTGTCCATTACAGAGAAGTGAAGGAGGGGTACAAGTCTAGCATCTCTCGTTTGCTACCAGATTTGGGAGAACAGGTGGCTAACCATCAAAGCGGTTCACCTATCTCTGCACAAGCAAATTTGTCCATTCCTACAGTTCAGACGTCTTGTTCACCGAGTCCAGATGAAGCCGATTGGAATGGACAAACATTTCCTTCCAAATTTGAGGATGGAGATTCTTGTGGGGGCCGCAATTCTGTAGCCTCTTCTATAGCTCAATCTCTTTTTGGTTCTGCTGTGGATAATACTTCTTTGCTTGGACATGGAGTATCTGGATTTCCTGAGATATCCAGGGACAAGTCTGGATCCTGGTGTGGGAGACCCAAATTTTCACATGGTGTTGAACCACCGAGGTGGGCTGAAATTCACAACTTAGAAAGAAGTAGAGCTGATACACTGCATGAACATAAATTGTTTGCTGTACAACCTAGTGAAGCTGACATTGTAGCTCTAAAACTAACCGATGCCAGATTAAATGGTGATGGCATAGTACATGGAATTTTGACCTGTGATAATAGTTTGATCAATGATGCAGACATCCCAGCACTTCCGCAGAGAGTGATTCAGGTTCCACAGGAGCATGCTTTCACCTCAGTTTATCCAATGGTTCACGATGGATCTAATTCTCAGACAGTTCTTGATTCTAACGCTCAAAATGTCAAGGAATCAAAGGACAGTATAAATAATGATGCAGCAGGAGAACTAAAGAAACTCGACAGCTTTGGGCGATGGTTGGACAAGGAAATTGGCAGAGACTGTGATGGTTCCTTGATGGCCTCAGACTCTGGTAATTATTGGAGTACACTTGATGCAGAAACTGATGAAAAGGAAGTGTCTAGTTTTTCCCACCATATGCAGTTGGACATTGATTCTTTGGGTCCTTCTCTTTCCCAGGATCAACTATTTACTATCTGTGATTTTTCACCAGATTGGGCATATTCTGGGGTTGAAACAAAGGTTTTAATTATTGGGTGCTTTTTGGGGAGCAAAAAGCTTTCCACTGATACCAAGTGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGTTCTGACAGAGAATGTTCTCCGATGTCAAACTCCTCTCCATGCTCCTGGGCATGTTCCATTTTATGTGACTTGCAGTAATAGGTTAGCCTGCAGCGAAGTTAGAGAATTTGAATACCGTGAAAAGCCAGAAGGAATTTTATCTTCTGCTGCTGTCAAAATTGCAGTAGATGATAAAATACACTTTCAAATGCGTCTTACAAGATTATTAAATTTGGGCCCGGAGAAGAAGTGGTTGGAATGCTCTATAGAGGAATGTGAACAATGTAAGATTAAGAACACCATAAGTTCTTTACGAAGTGGGATTGAAAAACATTGGAAAACGGTTGAAGGGACTTGTCTTGGATGCAGAGATGATCATGTGATGCATAATGAGGTACTGATTCAGAATTTGCTGAAGGACAGACTTTTTGAGTGGCTAGTCTGTAAAGTACACAAAGAAGGTGGTAGGGGGCCACATGTTCTGGATGAGGAAGGCCAAGGTGTTATACATTTGGCTGCAGCTCTTGGTTATGAATGGGCTATGGTTCCCATAGTTCATTCTGGTGTCCACCCCAATTTCAGGGATTCACATGGAAGAACAGCCCTGCATTGGGCATCGTACTGTGGAAGGGAGGAAATGGTCATTGCACTGATTAGGTTGGGTGCGGCCCCAGGTGCTGTAGATGACCCTACACCTACATTCCCAGGAGGTCAAACAGCTGCTGATTTGGCATCAAGTAGAGGTCATAAAGGAATTGCTGGATATTTGGCAGAAGCTGATCTCACAACACACTTTTCTATTTTGACGGTAAATGAATATTTGACAGATTATGATCCTACGGCCCTTCCTACCGAGGAGGCTATTCCATATTCAGATCAAGCTACTCCATCACATTTTGCTGCAGATGACGACATTCCTCTAAAAGGCTCTCTTGCTGCAGTCAGGAAATCAACTCATGTTGCTGCTCTCATCCATGCTGCCTTCCGAGCCCATTCATTCTGTCATAGAGAGTTAACTAAAAGCAACAACGATATTCCTCAAGTTTCACTTGATCTAGTTGCTCTTGGTCATGTAAATAAGGTCCGTAAGATAAATAATTATGAAGATTATTTGCATGTCGCAGCTATAAGGATCCAACAAAAGTATCGTGGTTGGAAGGGACGGAAAGATTTTCTAAAGATACGGAACCGAATAGTAAAAATTCAGGCTCATGTGAGGGGACATCAAGTCCGTAAGCTGTATAAGAAGGTTGTATGGTCTGTTGGTATTGTGGAAAAGGCAATACTACGTTGGAGGCGAAAGGGCAATGGCTTAAGGGGGTTCCGGGTGAAAAAAGTAATTGAAACATTAAGTCTGGATGAATATGACTTTTTACAAATTGGTCGGAAATTAAAGTATGCCAATGTGGAAAAAGCCCTTGCGAGAGTGAAGTCCATGGCTCGTCACCCGGAAGCAAGAGAACAGTACATGAGACTGGTATCAAAATTCAAAAATTCTAATGTGAATAGTGATGAAGAAGGCAATGCCTCGCAGCAAATGGAGAATGCACTACATAAGTGA 3015 42.35 MAESRGYVPIQHLDLVQILQEAQHRWLRPTEICEILRNHKKFQLTPDPPIQPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDRQLEHIVLVHYREVKEGYKSSISRLLPDLGEQVANHQSGSPISAQANLSIPTVQTSCSPSPDEADWNGQTFPSKFEDGDSCGGRNSVASSIAQSLFGSAVDNTSLLGHGVSGFPEISRDKSGSWCGRPKFSHGVEPPRWAEIHNLERSRADTLHEHKLFAVQPSEADIVALKLTDARLNGDGIVHGILTCDNSLINDADIPALPQRVIQVPQEHAFTSVYPMVHDGSNSQTVLDSNAQNVKESKDSINNDAAGELKKLDSFGRWLDKEIGRDCDGSLMASDSGNYWSTLDAETDEKEVSSFSHHMQLDIDSLGPSLSQDQLFTICDFSPDWAYSGVETKVLIIGCFLGSKKLSTDTKWGCMFGEIEVSAEVLTENVLRCQTPLHAPGHVPFYVTCSNRLACSEVREFEYREKPEGILSSAAVKIAVDDKIHFQMRLTRLLNLGPEKKWLECSIEECEQCKIKNTISSLRSGIEKHWKTVEGTCLGCRDDHVMHNEVLIQNLLKDRLFEWLVCKVHKEGGRGPHVLDEEGQGVIHLAAALGYEWAMVPIVHSGVHPNFRDSHGRTALHWASYCGREEMVIALIRLGAAPGAVDDPTPTFPGGQTAADLASSRGHKGIAGYLAEADLTTHFSILTVNEYLTDYDPTALPTEEAIPYSDQATPSHFAADDDIPLKGSLAAVRKSTHVAALIHAAFRAHSFCHRELTKSNNDIPQVSLDLVALGHVNKVRKINNYEDYLHVAAIRIQQKYRGWKGRKDFLKIRNRIVKIQAHVRGHQVRKLYKKVVWSVGIVEKAILRWRRKGNGLRGFRVKKVIETLSLDEYDFLQIGRKLKYANVEKALARVKSMARHPEAREQYMRLVSKFKNSNVNSDEEGNASQQMENALHK 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3538708 3546163 + Conep14aG0070000.1 Cone14ag0685 452534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0685 1004 SMART ANK_2a 721 750 IPR002110 GO:0005515(InterPro)
Cone14ag0685 1004 SMART ANK_2a 682 711 IPR002110 GO:0005515(InterPro)
Cone14ag0685 1004 FunFam Calmodulin-binding transcription activator 2 855 903 - -
Cone14ag0685 1004 SUPERFAMILY E set domains 444 531 IPR014756 -
Cone14ag0685 1004 Gene3D - 854 903 - -
Cone14ag0685 1004 CDD IPT 444 532 - -
Cone14ag0685 1004 ProSiteProfiles Ankyrin repeat region circular profile. 682 714 - -
Cone14ag0685 1004 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 992 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone14ag0685 1004 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cone14ag0685 1004 MobiDBLite consensus disorder prediction 985 1004 - -
Cone14ag0685 1004 Gene3D - 609 747 IPR036770 -
Cone14ag0685 1004 ProSiteProfiles Ankyrin repeat profile. 682 714 IPR002110 GO:0005515(InterPro)
Cone14ag0685 1004 SUPERFAMILY Ankyrin repeat 623 744 IPR036770 -
Cone14ag0685 1004 Gene3D Immunoglobulins 438 536 IPR013783 -
Cone14ag0685 1004 Pfam Ankyrin repeats (3 copies) 654 746 IPR002110 GO:0005515(InterPro)
Cone14ag0685 1004 ProSiteProfiles IQ motif profile. 856 885 - -
Cone14ag0685 1004 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cone14ag0685 1004 Pfam IQ calmodulin-binding motif 881 900 IPR000048 GO:0005515(InterPro)
Cone14ag0685 1004 Pfam IQ calmodulin-binding motif 858 876 IPR000048 GO:0005515(InterPro)
Cone14ag0685 1004 SMART iq_5 855 877 IPR000048 GO:0005515(InterPro)
Cone14ag0685 1004 SMART iq_5 878 900 IPR000048 GO:0005515(InterPro)
Cone14ag0685 1004 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cone14ag0685 1004 FunFam Calmodulin-binding transcription activator 2 438 535 - -
Cone14ag0685 1004 ProSiteProfiles IQ motif profile. 879 903 - -
Cone14ag0685 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 906 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0685 K21596 - - vvi:100240779 1237.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0685 Cone-Chr14:3538708 Cone8ag0227 Cone-Chr8:1250902 1.93E-193 dispersed
Cone14ag0685 Cone-Chr14:3538708 Cone15ag0697 Cone-Chr15:3763965 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007961 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44762 PF01764 Lipase_3 1.40E-36 CL0028 Cone TF