Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone14ag0717 | ATGGCGTCTGGTAGAAGAAATCAACCACAAGCACAATCATCGAACACGAGCAGAAGCAACACGAGACCTCAGAACCACACAGAATCAATCAGCAAAGCGATTGCTCAGTACACGGTGGATGCTCGTCTCCACGCAGTTTTCGAGCAGTCTGGAGAATCAGGTAAGTCTTTCGATTACTCTCAATCTGTACGGACCCCCACACAATCGGTCCCTGAACAGCAGATCACTGCGTATTTGTCCAAAATTCAAAGAGGAGGCCATATTCAACCTTTCGGTTGCATGATAGCCGTAGATGAGGCCACATTTGGAGTGATTGGTTACAGTGAAAACGCACGAGAAATGCTAGGGCTTACTCCACAGTCAGTTCCGAGTCTAGAAAAGCCTGAGATCCTCACAATTGGGACCGACGTACGGACATTATTCACTCCCTCAAGTGCGATTCTGCTTGACAAGGCTTTTGGGGCCAGGGAAATTTCCTTGTTAAATCCTGTTTGGATTCATTCTAAGAATTCAGGAAAACCTTTTTACGCGATTTTGCACAGGATTGATGTGGGGATTGTGATTGATTTAGAACCTGCTAGGACAGAAGACCCTGCTTTGTCAATAGCTGGGGCAGTACAATCTCAGAAGCTAGCCGTTAGGGCAATATCTCAATTACAATCACTCCCAGGTGGAGATATTAAGCTCTTGTGTGATACTGTGGTTGAAAGTGTAAGAGAGCTTACTGGTTATGATAGGGTTATGGTCTATAAATTTCACGAGGATGAACATGGTGAAGTTGTAGCAGAGAGTAAGAGGGCTGACTTGGAACCGTATATCGGATTGCACTATCCTGCGACTGATATCCCTCAGGCGTCAAGGTTTTTGTTTAAGCAAAACCGTGTTAGGATGATTGTTGATTGTCATGCTACACCTGTTCGGGTAGTTCAATATGAAGAGCTTTTGCAACCACTCTGTTTGGTTGGTTCAACCCTTAGAGCTCCTCATGATTGTCATGCTCAATACATGGCCAATATGGGTTCCATTGCATCTTTAGCAATGGCGGTTATTATTAATGGTACTGATGAGGAATCAACAGGAGGTGCAAGGTACTCAATGAGGCTATGGGGTTTGGTTGTCTGCCATCACACATCGGCTCGGTGCATTCCTTTCCCTTTGCGTTATGCTTGTGAGTTCTTAATGCAGGCCTTTGGACTTCAATTAAATATGGAATTGCAGTTGGCTGCTCAAATGTCTGAAAAGCATGTTTTAAGGACCCAAACACTCTTATGCGACATGCTTCTTCGGGATTCTCCAGCTGGCATTGTTACTCAGAGTCCGAGTATTATGGACCTTGTGAAATGTGATGGGGCGGCTCTTTTCTACCAAGGGAAGTATTATCCACTTGGTGTGACCCCAACTGAAGCCCAAATAAAGGATATCGTGACGTGGTTGTTGGCTTTTCATGGAGACTCAACCGGTTTAAGCACCGACAGTTTGGGTGATGCTGGATATCCTGGGGCAGCGTTGCTTGGGGATGAGGTTTCTGGGATGGCTGTTGCTTATATCACTAAAAGGGATTTTCTATTCTGGTTCCGATCTCACACGGCTAAAGAGATCAAGTGGGGTGGTGCAAAGCATCATCCGGATGATAAGGATGATGGTCAGAGAATGCATCCACGTTCTTCATTTAAGGCATTTTTGGAAGTGGTGAAGAGCCGGAGTTTGCCATGGGAGAATTCTGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTGCGAGATTCTTTTCGAGACGCCGAGGCAAGTAACTCTAGAGCAGTTGTTAATGCTCAGAGTGGTGCTGATCTGGCAATGCAAGGGATAGATGAGTTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATAGAGACTGCAACTGCTCCAATATTTGCTGTAGATGTTGATGGCCGTATAAACGGATGGAATGCCAAGGTTGCGGAGCTGACAGGGCTTCCTGTTGAGGAAGCAATGGGAAAATCCTTGGTCCATGATCTTATTTATAAAGAATCTGAAGAAAAGGTTGACAAACTTCTCTTTAATGCTCTAAGAGGTGAAGAAGATAAGAATGTGGAGATAAAGTTGAAAACATTTGGCCCAGAAGAGGAGAAGAAGCCTGTTTTTGTGGTGGTCAATGCTTGCTATAGCAAGGACTACACAAATAATATAGTCGGAGTTTGTTTTGTGGGTCAGGATGTTACTATCCAAAAAGTGGTCATGGACAAATTTATCCACATACAACGTGATTACAAGGCCATTGTTCATAGTCCAAATCCATTGATCCCTCCCATATTTGCTTCAGATGATAGCACTTGTTGCTTGGAGTGGAACACTGCCATGGAAAAACTCACCGGATGGTCCAGAAGTGATGTAATCGGGAAAATGTTGGTTGGGGAGGTTTTTGGTAGCTGTTGTCGGCTCAATGGCCCGGATGCACTGACAAAATTCATGATTGTCTTGCATAGTGTTATTGCTGGGCAAGATACAGACAAGTTTCCTTTTTCCTTTTACGGAAAGGATGGGAAATATGTACAAGCTCTTTTGACCGCAAACAAGAGGGTGAGTATGGAGGGCCAAAATGTTGGGGCCTTCTGTTTCTTGCAAATTGCTAGCCCCGAACTGCAACAAGCTCTTAAAGTACAGAGGTTTCAGGAGAAGAAATGCTTAGCTAGGATGAAAGAGTTGGCTTACATTTGCCAGGAAATAAAGAATCCTTTAAGTGGTACACGCTTTACCAACTCTCTTTTGGAGGCTACGGAGTTGACTGAAGATCAAAAACAGTTTCTCGAGACTAGTGTTGCTTGTGTGAAACAGATGTCAAAGATTATTAAAGATGTAGATTTGGATACAATTGAAGATGGTTCATTGGAGCTTGAGAAAGCAGAATTTTTACTTGGGAGTGTCATCGATGCTGTTGTTAGCCAAGTAATGATATTTCTGAGAGAAAGAAGATTGCAGTTGATCCGGGATATTCCAGAAGAAGTGAAAACTTTAGCTGTTTATGGTGATCAAGTGAGAATTCAACAGGTTTTGGCTGATTTCTTGATGAACATGGTGCGTTATGCACCATCTCCTGAAGGCTGGGTTGGAATTCATGTCAGTCCAAGCTTAAAGCAAATTTCCGATGCTCTCACTCTTGTGCGTATTGAATTCAGGATGGTATGCCCGGGGGAAGGTCTTCCTGCCGATTTGGTTCAAGACATGTTTCATAGCAGTAGATGGATGACTCAGGAGGGTCTAGGGCTGAGCATGTGTAGGAAGATTTTAAAGCTAATGAACGGTGAAGTCCAGTATATCAGAGAGTCAGAAAGATGCTACTTTTTAACAGTTCTTGAACTTCCCATGACTAGAAGGGACCTAAACAGTGGGGAATAG | 3393 | 43.8 | MASGRRNQPQAQSSNTSRSNTRPQNHTESISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSVRTPTQSVPEQQITAYLSKIQRGGHIQPFGCMIAVDEATFGVIGYSENAREMLGLTPQSVPSLEKPEILTIGTDVRTLFTPSSAILLDKAFGAREISLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVVQYEELLQPLCLVGSTLRAPHDCHAQYMANMGSIASLAMAVIINGTDEESTGGARYSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQMSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALFYQGKYYPLGVTPTEAQIKDIVTWLLAFHGDSTGLSTDSLGDAGYPGAALLGDEVSGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKSRSLPWENSEMDAIHSLQLILRDSFRDAEASNSRAVVNAQSGADLAMQGIDEFSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLPVEEAMGKSLVHDLIYKESEEKVDKLLFNALRGEEDKNVEIKLKTFGPEEEKKPVFVVVNACYSKDYTNNIVGVCFVGQDVTIQKVVMDKFIHIQRDYKAIVHSPNPLIPPIFASDDSTCCLEWNTAMEKLTGWSRSDVIGKMLVGEVFGSCCRLNGPDALTKFMIVLHSVIAGQDTDKFPFSFYGKDGKYVQALLTANKRVSMEGQNVGAFCFLQIASPELQQALKVQRFQEKKCLARMKELAYICQEIKNPLSGTRFTNSLLEATELTEDQKQFLETSVACVKQMSKIIKDVDLDTIEDGSLELEKAEFLLGSVIDAVVSQVMIFLRERRLQLIRDIPEEVKTLAVYGDQVRIQQVLADFLMNMVRYAPSPEGWVGIHVSPSLKQISDALTLVRIEFRMVCPGEGLPADLVQDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLTVLELPMTRRDLNSGE | 1130 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3926212 | 3932032 | - | Conep14aG0073300.1 | Cone14ag0717 | 452566 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone14ag0717 | 1130 | SMART | HisKA_10 | 896 | 960 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone14ag0717 | 1130 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 82 | 194 | IPR035965 | - | |
| Cone14ag0717 | 1130 | NCBIfam | PAS domain S-box protein | 628 | 740 | IPR000014 | - | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 241 | 260 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 643 | 658 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 326 | 347 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 553 | 571 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 435 | 455 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 141 | 163 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 717 | 734 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 520 | 539 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 624 | 640 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | PRINTS | Phytochrome signature | 737 | 757 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 628 | 736 | IPR035965 | - | |
| Cone14ag0717 | 1130 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 326 | 335 | IPR013516 | - | |
| Cone14ag0717 | 1130 | Gene3D | PAS domain | 619 | 743 | - | - | |
| Cone14ag0717 | 1130 | FunFam | Phytochrome | 617 | 749 | - | - | |
| Cone14ag0717 | 1130 | Pfam | Phytochrome region | 418 | 591 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone14ag0717 | 1130 | Gene3D | PAS domain | 768 | 876 | - | - | |
| Cone14ag0717 | 1130 | FunFam | Phytochrome | 410 | 539 | - | - | |
| Cone14ag0717 | 1130 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 896 | 952 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone14ag0717 | 1130 | CDD | HATPase_Phy-like | 1007 | 1119 | IPR044767 | - | |
| Cone14ag0717 | 1130 | Gene3D | - | 877 | 958 | - | - | |
| Cone14ag0717 | 1130 | Gene3D | - | 207 | 566 | IPR029016 | - | |
| Cone14ag0717 | 1130 | ProSiteProfiles | PAS repeat profile. | 621 | 692 | IPR000014 | - | |
| Cone14ag0717 | 1130 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1008 | 1120 | IPR003594 | - | |
| Cone14ag0717 | 1130 | CDD | HisKA | 896 | 952 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone14ag0717 | 1130 | CDD | PAS | 766 | 874 | IPR000014 | - | |
| Cone14ag0717 | 1130 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 226 | 395 | IPR016132 | - | |
| Cone14ag0717 | 1130 | CDD | PAS | 632 | 739 | IPR000014 | - | |
| Cone14ag0717 | 1130 | Gene3D | PAS domain | 81 | 329 | - | - | |
| Cone14ag0717 | 1130 | Pfam | His Kinase A (phospho-acceptor) domain | 897 | 960 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone14ag0717 | 1130 | SUPERFAMILY | GAF domain-like | 206 | 402 | - | - | |
| Cone14ag0717 | 1130 | Pfam | PAS fold | 77 | 193 | IPR013654 | GO:0006355(InterPro) | |
| Cone14ag0717 | 1130 | ProSiteProfiles | Histidine kinase domain profile. | 903 | 1123 | IPR005467 | - | |
| Cone14ag0717 | 1130 | PIRSF | Phytochrome_conventional | 8 | 1128 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Cone14ag0717 | 1130 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 971 | 1120 | IPR036890 | - | |
| Cone14ag0717 | 1130 | FunFam | Phytochrome | 959 | 1125 | - | - | |
| Cone14ag0717 | 1130 | Pfam | PAS fold | 624 | 739 | IPR013767 | GO:0006355(InterPro) | |
| Cone14ag0717 | 1130 | Pfam | PAS fold | 755 | 874 | IPR013767 | GO:0006355(InterPro) | |
| Cone14ag0717 | 1130 | SUPERFAMILY | GAF domain-like | 413 | 590 | - | - | |
| Cone14ag0717 | 1130 | PANTHER | OS08G0260000 PROTEIN | 15 | 1000 | - | - | |
| Cone14ag0717 | 1130 | SMART | gaf_1 | 226 | 415 | IPR003018 | GO:0005515(InterPro) | |
| Cone14ag0717 | 1130 | FunFam | Phytochrome | 877 | 958 | - | - | |
| Cone14ag0717 | 1130 | SMART | pas_2 | 754 | 824 | IPR000014 | - | |
| Cone14ag0717 | 1130 | SMART | pas_2 | 623 | 690 | IPR000014 | - | |
| Cone14ag0717 | 1130 | Gene3D | - | 959 | 1124 | IPR036890 | - | |
| Cone14ag0717 | 1130 | SMART | HKATPase_4 | 1008 | 1123 | IPR003594 | - | |
| Cone14ag0717 | 1130 | Pfam | GAF domain | 227 | 405 | IPR003018 | GO:0005515(InterPro) | |
| Cone14ag0717 | 1130 | Gene3D | - | 410 | 583 | IPR043150 | - | |
| Cone14ag0717 | 1130 | ProSiteProfiles | PAS repeat profile. | 755 | 807 | IPR000014 | - | |
| Cone14ag0717 | 1130 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 769 | 871 | IPR035965 | - | |
| Cone14ag0717 | 1130 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cone14ag0717 | 1130 | FunFam | Phytochrome | 768 | 876 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0717 | Cone-Chr14:3926212 | Cone8ag1368 | Cone-Chr8:10914209 | 0 | dispersed | |
| Cone14ag0717 | Cone-Chr14:3926212 | Cone15ag0729 | Cone-Chr15:4161999 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone14ag0717 | K12121 | - | vvi:100261882 | 1930.61 |