Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0727 ATGGAGGAAGCAAGATCGAGATGGCTCCGTCCAAATGAGATTCATGCAATTCTTTGTAATTACAAGCATTTCAGCATCCATGTTAAGCCAGTTAACTTGCCCAAAAGTGGAACCATTGTGTTATTTGATCGGAAGATGCTTAGAAACTTCAGGAAAGATGGTCATAACTGGAAGAAGAAAAAGGATGGGAAGACTGTTAAAGAAGCACATGAACACCTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACACAACCTTCGTCCGGAGATGTTACTGGCTACTTGATAAGAGTCTAGAACACATAGTCCTGGTCCATTATCGTGAAACACGAGAGTTGCAAGGTTCTCCAGCCACACCCGTGAATTCTAGTTCTACTTCAGCCTCTGACCCATCTCCTCCCTGGCTTTTATCTGAAGAACTTGACTCTGGGACTGATCATGCTTATCATCTTGGCGAGAAAGAACTTCTAGATCCTGGTGATAGTATAACTGTCCAGAATCATGAAAAGAGGCTTCATGAGATTAACACACTTGATTGGGATGAGCTTCTTATGAACCCAACTATGCTTATAGAAGACCAACTTTTTAGCAATGATCAACAGAATCACAATGCGATAAATGGGTCCCTAACAAATGTTGCTGATAATTTACTGGCTGAAATTTGTCCATTTGATAGTCCAACTGAACCAATTGGAATCAATAGCAGTCATTTGTCAGAGAGTGTCTATATTCCAACAATGGGCGATCAAGTAAATTCAAATGCGCAGACAATAGAATACACTTCCACTTCCCAAAATATTGCCTATTCCTCAAACATTTTGGTTAATGAGAGATTGCAAGGTCAGGACAGTTTTGGACAGTGGATAACCCAGATTATCACTGATTCTCCCGATTCAGCAAATGATACTGGTTTTGGGTCCTCGATTACAACTATTCAGGACACACTTCTCTCTGCTTCAATAGATCATCACCAACCTTTTGTTCCAGAACAAATATTTACCATAAATGAAATTTCACCAGCATGGGCTTTTGCATCAGAGAAAACCAAGATTCTAGTCACTGGATTTTTTCATCAAGAGTTCCTTCACCTGGAAAAGTCAAAAATGTTGTGCATCTGTGATGGTATCTCAATTCCTGCAGAAATGGTTCAATCTGGAGTATATCGCTTAGTTGTGCCATCACATTCCCGAGGATTAGTAAATCTGTATATGAGTATAGACGGTCTTAAGCCCATCAGTCAAGTTCTGAATTTCGAGTATTGCACACCATTATTGCATGACCCAATAGTTTCTGCAGAAGAGAAGGACAAGTGGAACGAGTTCCAAGTTCAAATGCGGCTGGTCTATCTGCTCTTCTCGAATTCTAAGACCCTTGACATTCTATCTAATAAGGTATCACCAAATTCACTTAAGGATGCAAAGAAGTTCGCTCTCAAAACCTCAAACATTTCTAAAAGCTGGACTTATTTCATCAAGTCAATTGAAGAGAATAGAACTCCATTTCCTCCAGCAAAAGATGGTCTGTTTGAACTTATTTTGAAGAACAGACTGAGAGAATGGTTGCTGGAAAGAGTTGTCGAAGGCTCCAAGAAGAGCTCCGAATTTGATGGGCATGGTCAAGGAGTAATACATTTATGTGCTATTTTGGGATATACGTGGGCTATATGTTTGTTTGCTTGGTCCGGTCTATCCCTGGATTTTCGGGACAAGCATGGATGGTCAGCTCTTCACTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGGAGTTCTCTTATCTGCAGGGGCAAAGCCAAACTTGGTAACAGACCCCACCTCTGAACACTCCGGGGGTCGCACGGCTGCTGATCTGGCATCCATGAACGGTTACGGAGGCTTAGCTGCATATCTTTCTGAAAAGTCCTTGGTAGCACAATTCGAGGACATGAGTTTAGCTGGAAATATCAGTGGTTCATTGCAAAGCACCGCAGCTGATCCAGCCAACCTGGAGAACCTAAGTGAGGACCAAGAGAATATAAAAGAAACTCTGGCAGCTTACCGGACGGCTGCTGATGCTGCGGCTCGTATTCAAGTTGCTTTCCGAGAACACTCTCTAAAGCAAAGGACCAAGCATGTGGAGATCTCCAATCCGGAGGAGGAGGCACGGAATATAGTTGCGGCCTTGAAAATTCAGCATGCTTTCCGTAACTATGAGACCCGAAAGAAAAAAGCAGCTGCTCGTATTCAGCATAGATTCCGAACTTGGAAGATACGTAAAGATTTCCTCAATATGCGGCGTCAAGTTATCAAAATTCAAGCACTGTTTCGAGGCTACAAAGCAAGGAGACAGTATAGTAAGATTGTATGGTCGGTTGGAGTTCTTGAGAAGGCTATATTGCGTTGGCGTTTAAAGAGAAAAGGCTTCCGGGGGCTCCAAGTTGAAGCAGTTGCAGAGGATAGGCAGGAAAGTGATGCCGAGGAGGAATTCTTCCAAGCGAGCCGGAAACAAGCCGAAGAGCGTATTGGCAGTTCTCTAGAACGCGTTCATGGCATGTTTTATTCAAAGAAAGCGCAAGAAGAATATCATAGAATGAAGCTGGCCCATAATGAAGCAAAACTGGAATTTGAAGAGCTTATGAATCCTGATACTGATATGGATGGTTGA 2664 42.38 MEEARSRWLRPNEIHAILCNYKHFSIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNTTFVRRCYWLLDKSLEHIVLVHYRETRELQGSPATPVNSSSTSASDPSPPWLLSEELDSGTDHAYHLGEKELLDPGDSITVQNHEKRLHEINTLDWDELLMNPTMLIEDQLFSNDQQNHNAINGSLTNVADNLLAEICPFDSPTEPIGINSSHLSESVYIPTMGDQVNSNAQTIEYTSTSQNIAYSSNILVNERLQGQDSFGQWITQIITDSPDSANDTGFGSSITTIQDTLLSASIDHHQPFVPEQIFTINEISPAWAFASEKTKILVTGFFHQEFLHLEKSKMLCICDGISIPAEMVQSGVYRLVVPSHSRGLVNLYMSIDGLKPISQVLNFEYCTPLLHDPIVSAEEKDKWNEFQVQMRLVYLLFSNSKTLDILSNKVSPNSLKDAKKFALKTSNISKSWTYFIKSIEENRTPFPPAKDGLFELILKNRLREWLLERVVEGSKKSSEFDGHGQGVIHLCAILGYTWAICLFAWSGLSLDFRDKHGWSALHWAAYYGREKMVGVLLSAGAKPNLVTDPTSEHSGGRTAADLASMNGYGGLAAYLSEKSLVAQFEDMSLAGNISGSLQSTAADPANLENLSEDQENIKETLAAYRTAADAAARIQVAFREHSLKQRTKHVEISNPEEEARNIVAALKIQHAFRNYETRKKKAAARIQHRFRTWKIRKDFLNMRRQVIKIQALFRGYKARRQYSKIVWSVGVLEKAILRWRLKRKGFRGLQVEAVAEDRQESDAEEEFFQASRKQAEERIGSSLERVHGMFYSKKAQEEYHRMKLAHNEAKLEFEELMNPDTDMDG 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4023379 4030294 - Conep14aG0074300.1 Cone14ag0727 452576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0727 887 Gene3D Immunoglobulins 336 430 IPR013783 -
Cone14ag0727 887 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515(InterPro)
Cone14ag0727 887 SMART ANK_2a 578 607 IPR002110 GO:0005515(InterPro)
Cone14ag0727 887 ProSiteProfiles CG-1 DNA-binding domain profile. 1 123 IPR005559 GO:0003677(InterPro)
Cone14ag0727 887 Pfam IQ calmodulin-binding motif 766 784 IPR000048 GO:0005515(InterPro)
Cone14ag0727 887 ProSiteProfiles IQ motif profile. 741 770 - -
Cone14ag0727 887 Coils Coil 854 874 - -
Cone14ag0727 887 Gene3D - 740 788 - -
Cone14ag0727 887 Pfam CG-1 domain 3 116 IPR005559 GO:0003677(InterPro)
Cone14ag0727 887 Gene3D - 504 641 IPR036770 -
Cone14ag0727 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 791 IPR027417 -
Cone14ag0727 887 ProSiteProfiles IQ motif profile. 764 788 - -
Cone14ag0727 887 MobiDBLite consensus disorder prediction 120 145 - -
Cone14ag0727 887 SMART iq_5 763 785 IPR000048 GO:0005515(InterPro)
Cone14ag0727 887 SMART iq_5 740 762 IPR000048 GO:0005515(InterPro)
Cone14ag0727 887 ProSiteProfiles Ankyrin repeat region circular profile. 578 606 - -
Cone14ag0727 887 SUPERFAMILY Ankyrin repeat 540 640 IPR036770 -
Cone14ag0727 887 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 872 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone14ag0727 887 SMART CG_1_2 1 118 IPR005559 GO:0003677(InterPro)
Cone14ag0727 887 MobiDBLite consensus disorder prediction 122 140 - -
Cone14ag0727 887 Pfam Ankyrin repeats (3 copies) 550 640 IPR002110 GO:0005515(InterPro)
Cone14ag0727 887 Coils Coil 669 689 - -
Cone14ag0727 887 ProSiteProfiles IQ motif profile. 689 718 - -
Cone14ag0727 887 SUPERFAMILY E set domains 341 427 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0727 K21596 - - mdm:103431936 1144.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0727 Cone-Chr14:4023379 Cone8ag0227 Cone-Chr8:1250902 6.45E-98 dispersed
Cone14ag0727 Cone-Chr14:4023379 Cone15ag0616 Cone-Chr15:3199290 4.03E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44765 PF01148 CTP_transf_1 3.70E-65 CL0234 Cone TF