Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0738 ATGACTCTGTTTCACAGTAAAGGAACGATGTCAACAACGGCTAGTTCCTCTGGTTCTATGAAATCCGCCGATGGGGTTTCCGACCAGTTTCCGGCGGGTCTCCGAGTACTCGTCGTCGATGATGATCCTACCTGCCTTATGATCTTAGAGAAGATGCTTCAAACTTGTCTCTATTATGTCACGAAATGCAATCGAGCCGAAAAGGCCTTATCTATGCTCAGACAGAACAAAAACGGGTTTGATATTGTGATAAGCGATGTTCATATGCCGGACATGGATGGATTCAAACTTCTTGAACACATAGGTCTCGAAATGGATTTGCCGGTTATAATGATGTCGGCCGACGATGGGAAAAACGTAGTGATGAAGGGAGTGACACACGGGGCTTGTGATTATTTGATCAAGCCTGTTCGGATTGAGGCATTGAAGAACATATGGCAACATGTGGTTCGGAAAAGAAGGAATGAATGGAAGGATCAAGAACAATCTGGAAGTGTGGAGGAAGGATCAGACCGGCAACAAAAGTTTTCTGAAGATGGAGGAGAATACTCCTCCTCGGCAAATGAAGGGAATTGGAAGAACTCGTCAAAGAGGAGGAATAATGAGGATGAAGAGGAAACTGAGGAAAGGGAGGATGGTTCTACTTTGAAGAAGCCTAGGGTTGTTTGGTCTGTTGAACTTCATCAACAATTTGTAGCGGCCGTTAATCAACTCGGCATTGATACTGTTCCAAAAAAAATTCTCGAGTTGATGAATGTTCCAGGGCTCACTAGAGAAAATGTTGCAAGCCACCTTCAGAAATACCGGCTCTATCTTAGAAGGCTAAGCGGAGTTTCTCAACACCAAAGTTATTTGAGTACTTCTTTCATCATGGGATCTCAAGAAACAACTTTCGGGCCAATGTCATCGCTAAGTGGGCTTGATCTTCAAACCCTTGCCGTCACGGGCCAACTATCACCCCAAAGCCTTGCTACACTCCAAGCCTCTAGGCTCGGTGGTACGCCAGGAAAGTCAACGACCTTATCCGGCATGCCACTTGTCGATCATAGGAACAACATTTTCAGCTTTGAAAATCCGAAACCGAATAGTAAACCTCCAATGAGTTTACTTCACAGTAACTCTCGTCTAATGCAGATTCCTCAACCGAGTGAAAACAGTAGCAATATTCTTGGGTCGAGGGTTTCTTCCTCATCATCAGTCGGGCAATCTATCATTGCAAATGGGTATACCAATGGAGGAGGGGCGAGCTACAACAATAATAATAATTTAGTTCAGTCAAGCTCTTCAATGATGAATTTTCCCACCAACCAAACACAAGAATTGCCTGGAAACAACTTTCTTCTTCAAAGCAAAGGGTCATTTCCGGAAGAGGCTAACTCAGACATCAAAGGTTCCAGAAGATTATTGCCCGCATATAATATCTATAGCAGCTATTTGGAACAACCAAAATCCCAGTATTTGGACATGCAAAATGTGGCCACCACCACCTTGAATGGGTCCCAACAAAATGCATACCCTGTTCAAGGCGAGGCTATGTTCTCTTTGGGAGAAGTGATGGAGCAAGCGAACACACAAAATATCAGCCAGCAACTTAGCTGCGTGCTAGACAATTCAGTTAGAGTCAAAGCTGAGAGGATTTACGATGTCGAAAGCCAGACTGGAATCTTTCCCGATCATCTTGGTCAGGAGGATCTTCTTAGTGCCCTTCTCAAACAACAACAAGATGGAGTTGGACAGGCTGAAAGTGAGTTTAGCTTTGACGGGTTTCCGGTTGATAATATTCATGTTTAA 1791 44.05 MTLFHSKGTMSTTASSSGSMKSADGVSDQFPAGLRVLVVDDDPTCLMILEKMLQTCLYYVTKCNRAEKALSMLRQNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRRNEWKDQEQSGSVEEGSDRQQKFSEDGGEYSSSANEGNWKNSSKRRNNEDEEETEEREDGSTLKKPRVVWSVELHQQFVAAVNQLGIDTVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSYLSTSFIMGSQETTFGPMSSLSGLDLQTLAVTGQLSPQSLATLQASRLGGTPGKSTTLSGMPLVDHRNNIFSFENPKPNSKPPMSLLHSNSRLMQIPQPSENSSNILGSRVSSSSSVGQSIIANGYTNGGGASYNNNNNLVQSSSSMMNFPTNQTQELPGNNFLLQSKGSFPEEANSDIKGSRRLLPAYNIYSSYLEQPKSQYLDMQNVATTTLNGSQQNAYPVQGEAMFSLGEVMEQANTQNISQQLSCVLDNSVRVKAERIYDVESQTGIFPDHLGQEDLLSALLKQQQDGVGQAESEFSFDGFPVDNIHV 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4109366 4113051 - Conep14aG0075400.1 Cone14ag0738 452587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0738 596 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 374 IPR045279 GO:0009736(InterPro)
Cone14ag0738 596 SMART REC_2 34 146 IPR001789 GO:0000160(InterPro)
Cone14ag0738 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 273 IPR017930 -
Cone14ag0738 596 Gene3D - 34 171 - -
Cone14ag0738 596 FunFam Two-component response regulator 214 276 - -
Cone14ag0738 596 Gene3D - 215 276 - -
Cone14ag0738 596 SUPERFAMILY Homeodomain-like 215 274 IPR009057 -
Cone14ag0738 596 MobiDBLite consensus disorder prediction 179 194 - -
Cone14ag0738 596 FunFam Two-component response regulator 34 171 - -
Cone14ag0738 596 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 270 IPR006447 GO:0003677(InterPro)
Cone14ag0738 596 Pfam Myb-like DNA-binding domain 220 269 IPR001005 -
Cone14ag0738 596 CDD REC_typeB_ARR-like 36 150 - -
Cone14ag0738 596 PIRSF RR_ARR_type-B 10 589 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone14ag0738 596 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160(InterPro)
Cone14ag0738 596 MobiDBLite consensus disorder prediction 156 215 - -
Cone14ag0738 596 MobiDBLite consensus disorder prediction 1 23 - -
Cone14ag0738 596 MobiDBLite consensus disorder prediction 156 178 - -
Cone14ag0738 596 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160(InterPro)
Cone14ag0738 596 SUPERFAMILY CheY-like 33 163 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0738 Cone-Chr14:4109366 Cone19ag0738 Cone-Chr19:6052160 2.24E-105 dispersed
Cone14ag0738 Cone-Chr14:4109366 Cone15ag0748 Cone-Chr15:4345184 0 wgd
Cone14ag0738 Cone-Chr14:4109366 Cone4ag0123 Cone-Chr4:575340 7.18E-155 wgd
Cone14ag0738 Cone-Chr14:4109366 Cone7ag0120 Cone-Chr7:505034 9.72E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44767 PF04640 PLATZ 4.50E-26 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0738 K14491 - mdm:103403691 652.514