Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0740 ATGGGTGTTTTTACTTATGAAACCGAGACCATCACTTCGATCCCTCCTCCTAAAGTGTTCAAGGCTTTTGTCCTTGATTCCGACCACCTCATACCGAAGGTCGTTCCTCAAGCTATTGCCAGTATTGAAATTCTTGAGGGAAATGATGGGGTCGGAACTATCAAAAAACTCACCTTTGGCGAAGGAAGTCCATACAAGTATGTGAAGCAAAGGATTGATGCGCTAGACAAAGACAACTATACTTACAAGTACACAATAATTGAAGGAGATGGTATAGACGGCGATGCGATTGAGAAAATAGAGAACGAGCTCAAGGTGGTGGCTGCACCCTCTAATGGAGGATCCATCTTGAAGAGCACCAGCAAGTACTATACAAAGGGAGACTTTGAGCTCAAGCAGGATCAGATCAAGGCCGGTAAAGAGAAGGCCATGGGCCTTTTCAAGGCTGTTGAGAGCTATCTCTTGGCTAACCCTGATGCCTACTAA 486 45.06 MGVFTYETETITSIPPPKVFKAFVLDSDHLIPKVVPQAIASIEILEGNDGVGTIKKLTFGEGSPYKYVKQRIDALDKDNYTYKYTIIEGDGIDGDAIEKIENELKVVAAPSNGGSILKSTSKYYTKGDFELKQDQIKAGKEKAMGLFKAVESYLLANPDAY 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4133560 4134250 + Conep14aG0075700.1 Cone14ag0740 452589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0740 161 CDD Bet_v1-like 4 154 - -
Cone14ag0740 161 Pfam Pathogenesis-related protein Bet v 1 family 1 157 IPR000916 GO:0006952(InterPro)
Cone14ag0740 161 PANTHER OS03G0300400 PROTEIN-RELATED 1 161 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
Cone14ag0740 161 FunFam Major pollen allergen Bet v 1-A 1 161 - -
Cone14ag0740 161 SUPERFAMILY Bet v1-like 2 161 - -
Cone14ag0740 161 PRINTS Major pollen allergen Bet V1 signature 146 156 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Cone14ag0740 161 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Cone14ag0740 161 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Cone14ag0740 161 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Cone14ag0740 161 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Cone14ag0740 161 PRINTS Major pollen allergen Bet V1 signature 112 128 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Cone14ag0740 161 Gene3D - 1 161 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0740 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0740 Cone-Chr14:4133560 Cone15ag0945 Cone-Chr15:7504348 3.38E-55 dispersed
Cone14ag0740 Cone-Chr14:4133560 Cone14ag0741 Cone-Chr14:4140240 1.68E-45 tandem
Cone12ag0551 Cone-Chr12:3962732 Cone14ag0740 Cone-Chr14:4133560 4.05E-19 transposed
Cone14ag0740 Cone-Chr14:4133560 Cone4ag0125 Cone-Chr4:584209 4.09E-55 wgd
Cone14ag0740 Cone-Chr14:4133560 Cone7ag0122 Cone-Chr7:518182 8.24E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0740 . Cone7ag0122 Cone4ag0125 . . . . Blo02g00489 . . . . . . . . . . . . . . . . Bhi12g01894 Tan06g2719 Cmetu11g0065 . . . Lcy12g0773 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145