Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0748 ATGTCTGATTCAGGTTCTAACAGGAAGAGGATCACTATAATATCCGTCTCGGTTTTTCTTGTGGTTGCCGTGGTTGCTTCTGTGGCGATTGGTGCCAACCGCGGATCAGCACCTCAAAAAACGGATGACAAGGATAGTGAAATCTCAACCTCGACAAAGGCGGTTGAGACCATATGCAAGCCAACTGATTATAAAGACACGTGCGAGAAAAGCCTCCAGGGCGTTGCCAGAAACGTCACGAACGTGAATGATTTGGTCAAATTAGCCTTTGGAGTTTCTATGGACCAAATAAAGGTAGCGATTCAAAACTCCACCACCTTGAAAGACTTGTCTAAGGACCCGATGTCTAGCCAGGCGCTTCAGAATTGCCGTGAGCTGCTCGAGTATTCGATAGATGATGTCAAGAAATCGATAGAAAGTATTGGTAAGCTCGATGTGACTAACCTAGAAAAGGCAGTAGAGGATCTCAGGATATGGCTTAGTGCCGCTATAACTTACGAGCAAACATGTCTGGATGGGTTCCGGAACACTAGAAGTGAAGCGGGTGAGAAGATGAAGTTGTTTTTGAGGTCCGCAATGGAGATGACGAGCAACGGTCTTGCTATGGCGACAGAAATCTCTAATGCTTTGAAACTACCGACTCCAGGAGACAATACCCCCCTACCCGGAGATAAGACCCCAAAGAAGATGCGAAGGCTCTTGTCCGAGATGCCGTCGTGGGTTAGTGAAGGTCACCGTAGGCTTCTCCAAACGGCTAAAGCCAATGTTGTCGTGGCCAAGGATGGAAGTGGAAAGTACAAGACGATCACTGAGGCATTGAAGGATGTGCCAAAGGCCAATAGCAAGCCTTTTGTGATTCAAGTCAAGGCAGGAGTCTATAAGGAAAATGTTTTTGTTTCTAAGGACCAGACCAATGTCGTCCTCATCGGAGAGGGTCCGACCAAGACCAAGATCACTGCTAGCCAGAACTATGCCGATGGAGTCGCTGTTTGGATGACCGCTACATTTGCCGTGGTCGGGAACAACTTCATTGCCAAGGACATAGGATTCGAGAATACGGCCGGACCCACAAGACACGAAGCGGTTGCACTTCGGGTCGAGTCAGACATGGCCGTCTTCTACAACTGCCAAATTGATGGGTACCAGGGCACTCTCTACGCCCACGCTCACCGCCAATTCTACCGCGACTGCACCATCTCCGGAACTGTCGACATCATCTTCGGAAATGCTGCTGCCGTGTTCCAAAACTGCAAGGTGATTGTTAGGAAGCCATTGGATGTCCAGAAGTGTGTCGTGACAGCACAAGGAAGGATCGACAGGCGGGACCCTACAGCAATCGTGCTCCAAAACAGCACCATTTCTCCCAGCTTGGAGTACAATACCGTGAGCAAGACAACTAAGTCTTATCTCGGGAGACCGGGGAAGGAGTTTGCAAGAACTATCATCATGCAGTCTCAAATCGAGGGCTTCATTCAACCGGAAGGGTGGATACCATGGGCCGGTAGCTTCGGTCTCGACACATGCTTCTTTGCCGAGTATAACAACAAAGGTCCAGGAGCTGTGCAAACAAAGAGAGTTAAATGGCTAGGTATTAAGAAGATCACACAGGAAGAGGCTACAGCATTCACTCCGGGAAAGTTTGTTCTTGGGGATTCGTGGATCAAGTCCACTGGCATTCCATATACTTCTGGACTGGTTTAA 1701 48.79 MSDSGSNRKRITIISVSVFLVVAVVASVAIGANRGSAPQKTDDKDSEISTSTKAVETICKPTDYKDTCEKSLQGVARNVTNVNDLVKLAFGVSMDQIKVAIQNSTTLKDLSKDPMSSQALQNCRELLEYSIDDVKKSIESIGKLDVTNLEKAVEDLRIWLSAAITYEQTCLDGFRNTRSEAGEKMKLFLRSAMEMTSNGLAMATEISNALKLPTPGDNTPLPGDKTPKKMRRLLSEMPSWVSEGHRRLLQTAKANVVVAKDGSGKYKTITEALKDVPKANSKPFVIQVKAGVYKENVFVSKDQTNVVLIGEGPTKTKITASQNYADGVAVWMTATFAVVGNNFIAKDIGFENTAGPTRHEAVALRVESDMAVFYNCQIDGYQGTLYAHAHRQFYRDCTISGTVDIIFGNAAAVFQNCKVIVRKPLDVQKCVVTAQGRIDRRDPTAIVLQNSTISPSLEYNTVSKTTKSYLGRPGKEFARTIIMQSQIEGFIQPEGWIPWAGSFGLDTCFFAEYNNKGPGAVQTKRVKWLGIKKITQEEATAFTPGKFVLGDSWIKSTGIPYTSGLV 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4183617 4185549 + Conep14aG0076500.1 Cone14ag0748 452597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0748 566 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cone14ag0748 566 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone14ag0748 566 CDD PMEI-like_3 57 208 - -
Cone14ag0748 566 SMART PMEI_2 50 202 IPR006501 GO:0004857(InterPro)
Cone14ag0748 566 FunFam Pectinesterase 249 565 - -
Cone14ag0748 566 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857(InterPro)
Cone14ag0748 566 Gene3D - 249 565 IPR012334 -
Cone14ag0748 566 NCBIfam pectinesterase inhibitor domain 50 204 IPR006501 GO:0004857(InterPro)
Cone14ag0748 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 206 IPR035513 -
Cone14ag0748 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cone14ag0748 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 207 IPR035513 -
Cone14ag0748 566 PANTHER PECTINESTERASE 10 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone14ag0748 566 FunFam Pectinesterase 51 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0748 K01051 - - csv:101212686 632.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0748 Cone-Chr14:4183617 Cone17ag0033 Cone-Chr17:214851 3.34E-133 dispersed
Cone15ag0597 Cone-Chr15:3063233 Cone14ag0748 Cone-Chr14:4183617 3.81E-118 transposed
Cone14ag0748 Cone-Chr14:4183617 Cone15ag0754 Cone-Chr15:4429604 6.43E-244 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone17ag0452 Cone-Chr17:2131807 5.65E-116 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone20ag0960 Cone-Chr20:6865051 5.30E-121 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone3ag0815 Cone-Chr3:4194970 6.01E-198 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone4ag0137 Cone-Chr4:626754 4.93E-209 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone5ag0054 Cone-Chr5:269828 9.96E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g153 Blo01g00064 . . Bda08g00298 . . . . Cmo08g01213 Cmo17g00328 Cma06g01518 . . Car14g01429 . Cpe08g00172 Cpe03g01352 . . . . . . . Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 . Csa06g01790 Chy11g01528 . . . . . Bpe05g00827 . . . Sed02g0010 . Cmo14g01648 Cma08g01239 Cma17g00341 . . . . Bhi12g02036 Tan06g2699 Cmetu02g1549 . Hepe03g0084 . Lcy12g0754 Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
Vvi5g259 . . . . . . . . Cmo08g01213 Cmo17g00328 Cma06g01533 . . . Sed02g1163 . . Bhi01g01041 Tan10g1033 Cmetu06g0197 Lac11g0857 Hepe05g1419 . Lcy11g1391 Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 Lsi05g01558 . Chy11g01528 Cme06g00752 . . . . Bpe05g00827 . . . . Cmo06g01513 . Cma08g01239 Cma17g00341 . . . . . . . . . . . Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000192 6 4 7 5 3 4 2 4 4 4 4 4 18 4 4 18 4 8 1 4 4 5 16 7 9 3 8 10 5 3 182