Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0770 ATGGGTGATAAAACTGGATCAAGTGCTAATTCAAACGATGGAGATAGTTGCCTGAAAGAGCAAGACAGATTATTGCCAATAGCCAACGTTGGTCGGATAATGAAGCAAATATTGCCAACAAATGCAAAGATATCTAAAGAATCGAAGGAGACCATGCAAGAATGCGTGTCGGAATTCATAAGCTTCGTGACCAGTGAAGCGTCAGAGAAATGCCAGAAAGAGCGCCGGAAGACAGTGAATGGGGATGATGTTTGCTCGGCACTAGAAACCCTCGGGTTCGTTGATTACTGGGGGCCTTTAAGAAGGTATTTGAATAGATATAGAGAGCTTGAAGGTGATAAAGCTAATCAAGAAAAGTCCAATTGCTTCGAAGAAATCAGAAGAGGCTAG 390 42.56 MGDKTGSSANSNDGDSCLKEQDRLLPIANVGRIMKQILPTNAKISKESKETMQECVSEFISFVTSEASEKCQKERRKTVNGDDVCSALETLGFVDYWGPLRRYLNRYRELEGDKANQEKSNCFEEIRRG 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4418786 4419365 + Conep14aG0078700.1 Cone14ag0770 452619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0770 129 Coils Coil 100 120 - -
Cone14ag0770 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 120 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone14ag0770 129 Gene3D Histone, subunit A 14 127 IPR009072 GO:0046982(InterPro)
Cone14ag0770 129 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cone14ag0770 129 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cone14ag0770 129 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cone14ag0770 129 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag0770 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cone14ag0770 129 SUPERFAMILY Histone-fold 21 118 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0770 Cone-Chr14:4418786 Cone17ag0499 Cone-Chr17:2465361 3.84E-48 dispersed
Cone10ag0770 Cone-Chr10:3905216 Cone14ag0770 Cone-Chr14:4418786 8.62E-40 wgd
Cone14ag0770 Cone-Chr14:4418786 Cone20ag0927 Cone-Chr20:6668636 3.62E-48 wgd
Cone14ag0770 Cone-Chr14:4418786 Cone3ag0792 Cone-Chr3:4075231 1.35E-40 wgd
Cone14ag0770 Cone-Chr14:4418786 Cone5ag0034 Cone-Chr5:205068 7.71E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44768 PF00248 Aldo_ket_red 8.20E-51 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0770 K08065 - vvi:104879231 176.792