Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone14ag0775 | ATGGAGCGGTACGGTCGGACTACAGAGGGCTCACAGTCCGATCCGTCTCCGGAATGGACGGCTTCGGTGCCTGAATCAGGTCTCGAGGAGTCCGTTTGGCAGCTTGGATTGGGAGAAGGCGGTGAATCGTATCCAGAACGTCCCGACGAGGCTGATTGTATTTACTATTTGCGAACAGGATTTTGTGGATATGGCGCTAGATGTAGATTCAATCATCCTCGTGATCGTAGCATGGTTGTGGGAGCTGCAAGGCCAGGGGGAGGCGGAGAGTATCCTGAGCGAATAGACCAGCCCATATGCCAGTATTATATGAGGACGGGGATGTGTAAATTCGGTGCTTCCTGTAAATATCATCATCCAAGACAGGGCGGAGGTTCTTTGAGCCCGGTATCTCTGAATTATTATGGATATCCGTTAAGGCTGGGGGAGAAAGAGTGTTCATATTATGTGAAAACTGGGCAGTGCAAATTCGGTGCGACATGTAAATTCCATCATCCACAGCCAGCTGGCTTACAATTTCCGGCCCCATCTCAAGTCACTCAAGTTCTGCCACCTGTACCTTCACACTCTGTATACCCTCCTCCTCCTGTGCAGTCTTCTTCTGTTCCTTCACTGCAACAATACGGTGTTGTAGTTGCTAGGCCATCTTTGCTACCTAGTTCATATGTCCATAGTGCGTACGGTCCCTTACTTCTTTCCCCCGGCATGGTTCCATTTCCTAGCTGGAGTCCTTACCCGGCGCCTATGAGCCAAATTGCCTCTCCTAGTACTCAACCTTCTGTTGGTTCGATGCCGTTTTATGGGATAACGCAACTATCTCCTTCTGCACCTGCCTATACAGGACCCTATCAGTCTCTGCCTTCTGCTGATCCCTCGAGCAGTAGCTTATTTCCAGAAAGACCTGGACAACCAGAATGTCAGTATTACATGAGAACTGGGGATTGTAAATTTGGATCCTCATGTAGATATCATCATCCCCCAGAATCGGCTGCCATGACAAGTCTTGTCTTTAGTCCCATGGGTCTTCCTCTACGTCCGGGGGCCCCACCATGCACTCACTTTACACAACATGGAGTATGCAACTTTGGTCCGGCATGCAAATACGACCACCCAATGGGAACCCTAAGTTACAGTCCATCCGCCTCGTCCCTTTCCGATATGCCTGTTGCCCCCTACCCTGTCGGATCATCAGTTGCCACCTTAGCTCCATCATCCTCGTCGTCCGAACTTATCCCGGGACCCACCAAGGACTCGAGTTCGTCCCGAATGTCTTCATCCATGAGTACATCTAGTGGATCTGTCGGCTCAACAGTATCACGAAGTGGGCCCGTACAGCCTTCTCAAAGTTCTGGCCCAGGCCTTTCAACTACTAGCAGCACAGAAGCTAGCATTTAA | 1395 | 50.39 | MERYGRTTEGSQSDPSPEWTASVPESGLEESVWQLGLGEGGESYPERPDEADCIYYLRTGFCGYGARCRFNHPRDRSMVVGAARPGGGGEYPERIDQPICQYYMRTGMCKFGASCKYHHPRQGGGSLSPVSLNYYGYPLRLGEKECSYYVKTGQCKFGATCKFHHPQPAGLQFPAPSQVTQVLPPVPSHSVYPPPPVQSSSVPSLQQYGVVVARPSLLPSSYVHSAYGPLLLSPGMVPFPSWSPYPAPMSQIASPSTQPSVGSMPFYGITQLSPSAPAYTGPYQSLPSADPSSSSLFPERPGQPECQYYMRTGDCKFGSSCRYHHPPESAAMTSLVFSPMGLPLRPGAPPCTHFTQHGVCNFGPACKYDHPMGTLSYSPSASSLSDMPVAPYPVGSSVATLAPSSSSSELIPGPTKDSSSSRMSSSMSTSSGSVGSTVSRSGPVQPSQSSGPGLSTTSSTEASI | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 4485559 | 4490101 | + | Conep14aG0079200.1 | Cone14ag0775 | 452624 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone14ag0775 | 464 | SUPERFAMILY | CCCH zinc finger | 141 | 168 | IPR036855 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | MobiDBLite | consensus disorder prediction | 398 | 464 | - | - | |
| Cone14ag0775 | 464 | SUPERFAMILY | CCCH zinc finger | 304 | 328 | IPR036855 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | ProSiteProfiles | Zinc finger C3H1-type profile. | 94 | 122 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SUPERFAMILY | CCCH zinc finger | 50 | 75 | IPR036855 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SUPERFAMILY | CCCH zinc finger | 95 | 121 | IPR036855 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SUPERFAMILY | CCCH zinc finger | 349 | 375 | IPR036855 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cone14ag0775 | 464 | Gene3D | - | 124 | 173 | - | - | |
| Cone14ag0775 | 464 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | Gene3D | - | 45 | 122 | - | - | |
| Cone14ag0775 | 464 | Gene3D | - | 298 | 383 | - | - | |
| Cone14ag0775 | 464 | SMART | c3hfinal6 | 345 | 372 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SMART | c3hfinal6 | 140 | 167 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SMART | c3hfinal6 | 95 | 121 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 97 | 121 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 347 | 372 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 143 | 167 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 301 | 327 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | ProSiteProfiles | Zinc finger C3H1-type profile. | 345 | 373 | IPR000571 | GO:0046872(InterPro) | |
| Cone14ag0775 | 464 | PANTHER | PROTEIN PHOSPHATASE RELATED | 29 | 373 | IPR050974 | GO:0003729(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0775 | Cone-Chr14:4485559 | Cone17ag0492 | Cone-Chr17:2390133 | 3.92E-47 | dispersed | |
| Cone11ag0862 | Cone-Chr11:7153370 | Cone14ag0775 | Cone-Chr14:4485559 | 6.29E-97 | wgd | |
| Cone14ag0775 | Cone-Chr14:4485559 | Cone15ag0782 | Cone-Chr15:4743249 | 1.49E-216 | wgd | |
| Cone14ag0775 | Cone-Chr14:4485559 | Cone18ag0696 | Cone-Chr18:3717195 | 2.66E-92 | wgd | |
| Cone14ag0775 | Cone-Chr14:4485559 | Cone20ag0922 | Cone-Chr20:6637882 | 1.38E-46 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44770 | PF10345 | Cohesin_load | 6.90E-15 | CL0020 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone14ag0775 | - | - | - | 0.0 |