Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0786 ATGGCCCTCAAGAGAGAGAGATTTTCCCGAGAGATGTCTCTGCTGAAGAGTATAATTCAGGATTTTAGGTCTAGATCGCGTCGAGTGGTGCAGGACGGCTCGGCGGCAGAGGAGAGGGAGGTTTCCGATCAGAGCTACTGGTCTTCCTTGCCACCAGAGTTGCTCAGAGATGTTCTTTTAAGAATCGAGGGATCCGAGGTGGTTTGGCCGCTGAGAAAGAGCGTAGTGGCTTGCGCTGGAGTTTGCCGTAGTTGGAGACAGGCTACGAAGGAGATCGTGCGTACTCTAGAAGTTTCCGGCAAGCTGACGTTTCCGATCTCTGTTAAGCAGCCTGGTCCAAGGGATATTCTTCTTCATTGCTTCATAAAACGGAACCGCTCATCGCAAACTTATCATCTTTTCCTTAATTTGACTAACGCACTTGCTGACGATGGAAAATTTCTTCTTGCTGCATGCAAATATAGACGGCCTACCTGCACAGATTATGCCATTTCTCTAAATGCCAATGATATGTCAAAATGTAGCAGCACCTATGTTGGGAAACTGAGGTCTAATTTTCTTGGGACCAAGTTCACAATATTTGATGGGCAGCCACCTCATGAGGGAGCTAAGATTGCAAAAAGTTGTTCCTCGAGGCAAGTGAATTTGAAACAAGTCTCTCCGAAGCTTCCAACAGGGAATAATTACCCAGTTGCTCATATCTCATATGAGTTGAATGTTTTGGGTTCAAGGGGCCCAAGGAGGATGCAGTGTATCATGGATACTATTCCTGCCTCTGCAATCCAACCAGGAGGAGTGGCTCCTACACAAACTGAGGTTTTGCTTGGCAGTAGTATTGGGCCCTCTCAATCACTTCCACTTTCTCAATCAAGACTAACAGAAATGGATAACAACTTCTTATCCGAACATATGACGAATCAGAAAGATGGGATATTGTTACTAAGGAACAAGATTCCTAGGTGGCAAGAGAATCTTAGGTGTTGGTGCTTGAACTTTCACGGAAGGGTAACGGTTGCTTCAGTGAAAAACTTTCAGTTAGTGGCTTCTCTGGAAAATGGACTGGCTGGACTGGAACATGAGAAGGTTATCCTCCAATTTGGAAAAATAGGGAAGGATTTATTTACAATGGATTATAGATATCCAATCTCGGCTTTTCAGGCTTTTGCAATCTGCCTCAGCAGTTTTGACACCAAGATTGCTTGTGAATGA 1209 44.83 MALKRERFSREMSLLKSIIQDFRSRSRRVVQDGSAAEEREVSDQSYWSSLPPELLRDVLLRIEGSEVVWPLRKSVVACAGVCRSWRQATKEIVRTLEVSGKLTFPISVKQPGPRDILLHCFIKRNRSSQTYHLFLNLTNALADDGKFLLAACKYRRPTCTDYAISLNANDMSKCSSTYVGKLRSNFLGTKFTIFDGQPPHEGAKIAKSCSSRQVNLKQVSPKLPTGNNYPVAHISYELNVLGSRGPRRMQCIMDTIPASAIQPGGVAPTQTEVLLGSSIGPSQSLPLSQSRLTEMDNNFLSEHMTNQKDGILLLRNKIPRWQENLRCWCLNFHGRVTVASVKNFQLVASLENGLAGLEHEKVILQFGKIGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4593835 4596597 - Conep14aG0080300.1 Cone14ag0786 452635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0786 402 CDD F-box_AtTLP-like 47 91 - -
Cone14ag0786 402 Gene3D - 39 95 - -
Cone14ag0786 402 FunFam Tubby-like F-box protein 104 402 - -
Cone14ag0786 402 SUPERFAMILY F-box domain 39 90 IPR036047 GO:0005515(InterPro)
Cone14ag0786 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Cone14ag0786 402 PANTHER TUBBY-RELATED 37 401 - -
Cone14ag0786 402 Pfam Tub family 108 397 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Cone14ag0786 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Cone14ag0786 402 SUPERFAMILY Tubby C-terminal domain-like 97 402 IPR025659 -
Cone14ag0786 402 Gene3D Tubby Protein; Chain A 104 402 IPR025659 -
Cone14ag0786 402 ProSitePatterns Tub family signature 1. 332 345 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0786 Cone-Chr14:4593835 Cone17ag0479 Cone-Chr17:2307427 1.10E-164 dispersed
Cone14ag0786 Cone-Chr14:4593835 Cone20ag0910 Cone-Chr20:6566008 4.31E-164 wgd
Cone14ag0786 Cone-Chr14:4593835 Cone4ag0175 Cone-Chr4:819037 8.56E-201 wgd
Cone14ag0786 Cone-Chr14:4593835 Cone7ag0180 Cone-Chr7:753931 1.06E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44771 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0786 K19600 - csv:101217713 576.63