Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone14ag0786 | ATGGCCCTCAAGAGAGAGAGATTTTCCCGAGAGATGTCTCTGCTGAAGAGTATAATTCAGGATTTTAGGTCTAGATCGCGTCGAGTGGTGCAGGACGGCTCGGCGGCAGAGGAGAGGGAGGTTTCCGATCAGAGCTACTGGTCTTCCTTGCCACCAGAGTTGCTCAGAGATGTTCTTTTAAGAATCGAGGGATCCGAGGTGGTTTGGCCGCTGAGAAAGAGCGTAGTGGCTTGCGCTGGAGTTTGCCGTAGTTGGAGACAGGCTACGAAGGAGATCGTGCGTACTCTAGAAGTTTCCGGCAAGCTGACGTTTCCGATCTCTGTTAAGCAGCCTGGTCCAAGGGATATTCTTCTTCATTGCTTCATAAAACGGAACCGCTCATCGCAAACTTATCATCTTTTCCTTAATTTGACTAACGCACTTGCTGACGATGGAAAATTTCTTCTTGCTGCATGCAAATATAGACGGCCTACCTGCACAGATTATGCCATTTCTCTAAATGCCAATGATATGTCAAAATGTAGCAGCACCTATGTTGGGAAACTGAGGTCTAATTTTCTTGGGACCAAGTTCACAATATTTGATGGGCAGCCACCTCATGAGGGAGCTAAGATTGCAAAAAGTTGTTCCTCGAGGCAAGTGAATTTGAAACAAGTCTCTCCGAAGCTTCCAACAGGGAATAATTACCCAGTTGCTCATATCTCATATGAGTTGAATGTTTTGGGTTCAAGGGGCCCAAGGAGGATGCAGTGTATCATGGATACTATTCCTGCCTCTGCAATCCAACCAGGAGGAGTGGCTCCTACACAAACTGAGGTTTTGCTTGGCAGTAGTATTGGGCCCTCTCAATCACTTCCACTTTCTCAATCAAGACTAACAGAAATGGATAACAACTTCTTATCCGAACATATGACGAATCAGAAAGATGGGATATTGTTACTAAGGAACAAGATTCCTAGGTGGCAAGAGAATCTTAGGTGTTGGTGCTTGAACTTTCACGGAAGGGTAACGGTTGCTTCAGTGAAAAACTTTCAGTTAGTGGCTTCTCTGGAAAATGGACTGGCTGGACTGGAACATGAGAAGGTTATCCTCCAATTTGGAAAAATAGGGAAGGATTTATTTACAATGGATTATAGATATCCAATCTCGGCTTTTCAGGCTTTTGCAATCTGCCTCAGCAGTTTTGACACCAAGATTGCTTGTGAATGA | 1209 | 44.83 | MALKRERFSREMSLLKSIIQDFRSRSRRVVQDGSAAEEREVSDQSYWSSLPPELLRDVLLRIEGSEVVWPLRKSVVACAGVCRSWRQATKEIVRTLEVSGKLTFPISVKQPGPRDILLHCFIKRNRSSQTYHLFLNLTNALADDGKFLLAACKYRRPTCTDYAISLNANDMSKCSSTYVGKLRSNFLGTKFTIFDGQPPHEGAKIAKSCSSRQVNLKQVSPKLPTGNNYPVAHISYELNVLGSRGPRRMQCIMDTIPASAIQPGGVAPTQTEVLLGSSIGPSQSLPLSQSRLTEMDNNFLSEHMTNQKDGILLLRNKIPRWQENLRCWCLNFHGRVTVASVKNFQLVASLENGLAGLEHEKVILQFGKIGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE | 402 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 4593835 | 4596597 | - | Conep14aG0080300.1 | Cone14ag0786 | 452635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone14ag0786 | 402 | CDD | F-box_AtTLP-like | 47 | 91 | - | - | |
Cone14ag0786 | 402 | Gene3D | - | 39 | 95 | - | - | |
Cone14ag0786 | 402 | FunFam | Tubby-like F-box protein | 104 | 402 | - | - | |
Cone14ag0786 | 402 | SUPERFAMILY | F-box domain | 39 | 90 | IPR036047 | GO:0005515(InterPro) | |
Cone14ag0786 | 402 | ProSitePatterns | Tub family signature 2. | 387 | 402 | IPR018066 | - | |
Cone14ag0786 | 402 | PANTHER | TUBBY-RELATED | 37 | 401 | - | - | |
Cone14ag0786 | 402 | Pfam | Tub family | 108 | 397 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 314 | 331 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 228 | 255 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 162 | 178 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 178 | 202 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 359 | 378 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 332 | 348 | IPR000007 | - | |
Cone14ag0786 | 402 | PRINTS | Tubby superfamily signature | 380 | 402 | IPR000007 | - | |
Cone14ag0786 | 402 | SUPERFAMILY | Tubby C-terminal domain-like | 97 | 402 | IPR025659 | - | |
Cone14ag0786 | 402 | Gene3D | Tubby Protein; Chain A | 104 | 402 | IPR025659 | - | |
Cone14ag0786 | 402 | ProSitePatterns | Tub family signature 1. | 332 | 345 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0786 | Cone-Chr14:4593835 | Cone17ag0479 | Cone-Chr17:2307427 | 1.10E-164 | dispersed | |
Cone14ag0786 | Cone-Chr14:4593835 | Cone20ag0910 | Cone-Chr20:6566008 | 4.31E-164 | wgd | |
Cone14ag0786 | Cone-Chr14:4593835 | Cone4ag0175 | Cone-Chr4:819037 | 8.56E-201 | wgd | |
Cone14ag0786 | Cone-Chr14:4593835 | Cone7ag0180 | Cone-Chr7:753931 | 1.06E-203 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44771 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone14ag0786 | K19600 | - | csv:101217713 | 576.63 |