Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0793 ATGTCTACTTTTGAAGTGCTCCTATCAATTGCAGAAGAACAGTGTTTACTGTTTAGCGATTACAACTTCCCGAGAATCAGAAAAGCTGTTACAAAAGTTTACGCAGTAAATCCAAAGATGTTACTTCTAATCTCACACGATGAAATTGAGAGGATGTATCCACTTGGAGACGATGATTTCGATACGGAGATAAACGAATTTGATTCCCAGCTTGCACTGTCTTCCTTCATTGGAGATGATTATCTAGGTGATACAGTTAAGGATACTCCATCATGTCCAGAAATAACTGTCCCTTTTGATGATATTGCTTCATTGGATGATGTGTCTGATACCCAAGTAATGGATCTTGCGGGTGAGACCCAAGCACTGGATCTAGTGGGTGAGACCCAAACACTGGATCTTGCGGGTGAGACCCAAGCACTGGATCTAGCGGGTGAGACCCAACCACTGGATCTTGCGGGTGAGACCCAAGCACTGGATATTACAGGCCAGACCCAGGAAATCAATTTTTCTGGTGAAACTCAAGCAATGGATTTTGATGGTGAGACCCCAGCAATAGTTCTTTCAGGTCAAACCCAACAACTTGATGATCCTGATTTCTCCAGTCATAGTAATGGTGAAGCAACAGATATAACCGAAGTTCTGAAACATGTTGATAACCTAATTGATGATGAATTGGTAAGGAGGATTAGTCATTCTGTGCAAGATCAAGTTAAGGAGGGAGTAAAGGGTCCAATTGATGCTTTGCCTGATGAAAAGGGCACTGCAGGATCTCTTAGATTCGCTTCTCTTCGAGCGGAATCTTTACGGGCTTCTGGTCTAGCAGCAGCTCGTCGCATGGCTTATAAGGAAATCCATACTGGATCATTTCTCAAAACCCATACTGGATCGTTTCTCAAAAGTAATGGGGTATCTTTTGGGAAAGATTCATCGAAAGTGAAGGAGAAAGATGAAAAGGAACCGGTGAAAGTTGTGGAATTAAATAATGAGAACACTTTCAGTGTTGGGAGTTCAACAGTGAGAAAACTTGTTTTTGATGATTCAGTTTCCGAAGATATGGAGCTTTCTCATAGAACTGAAGGTGAAGACTTGCCTCCATTTCATGCTCGTGATGATCAGTTGGCTGGGTTAAGCTATATTGACTCTCAAGAGCCAGGGGATTTATCACAGGTTAATGCTCTTAATTTTGTGGACAAGTTTCTTGAAAATAATGCTGTAGATTTTGATCTAGAAGCTAACCTTGGAAAGGGTACTGGGGAAAAGTTAAAATCTGTTCATAATGCAAAAGGACCACAGAGTTTAGCCAAGATTGTAAATAGTAAAACAAAAGTTGGAGAATCAGGGATTTTTGAGTGGGATGATAAGTTTGAAGATGAAACCGGAGGAGAAATTCTCCAAAGAAGGAAGGAAGAGTTATTTAATAGATCTCTTACCCAACCTCGTAAGCGAAATGAAATGCTTAACATCCATAATGTGAAAAGGAATAAAGCTCATTCTGATTCAAGATTGCTGTTGCAGAATCTGAAGGAAAATAGAAAGATAGCAAAACATGTAGCTGTGAAATCTAAAAGGAATCTTGCCAAGGAGTGGGATGAACAATATAAGACTGATTCTTCCAGGGGAAAGTGTGAAGGCAATGTTATGGATATAGAGGAGTCTACCTTGTTGAATGTAGGTGTTGATACTCAGTTGGCAGCTGAAGCTATGGAAGCACTCTTTAATGGTGATGGCATCACTGACTGTGATATTAATGATAACCATCAATGTCTCCAGAAGCCATCAAAGAAGAGAACTGTGAAAAGTTCTATGGGAAATAGAAATAGTAGTTTGAAGTCGAAGAAATCCTCTTTTAACAAAAGGGTAAGTATTTCTGATGTGAGTTGTGCTTCAAGGCAAGTCAGAAAAGGATCTTCTGTTCCATCCAAGAAATGGTACGAGAGTATCAAGCAGTGCGAAACAGAGCCAGCAATGAAGAAATCAAATAAGGGTACCTCAAATGCAGATGAAAACATGAACTGTGCCTTAAATGGAGTTAGCTCAGTTATGAAGAGGCTTTTAGATGAAAAAGTTGGTGAGGTTTCTCCCATTGCCCGTCGAACTAGACATTCCTTGTTGTCAAATAAATTTAAGACGGCTGAAAATGGATTGATTGATTCTGAAGAACCAATGAACCATTTAACCGAGGTCAGGACACTTAAGAAGACAAGAACTAGTAAAGGAGTTAGGTCTTCTAAACTGTCATATGGAAATGTTCCAACTTCAGCTTCTGATCAATCTGGAGAACTGAATTATAAATTGTCAGGTCAGGATTATCAGAACATGAGGAAAACTCGATTGTCAATGTACGCTATTCCACTCTTGTCATTGGGGGATAATAGCGTGGAAGGAAACTTATTAAAAGAAAGTCTTGTTAAAAAAGCAGATAGAAAGAATGATGCAGAATTGCTGTCTTCTTCAGAAAATACTAGATTAGGTGAATCCCCAAGGAAAAAACGTAAACAATCTGACCCAGTGGATACTACTCCAGATTACTGTAAAACGCCTGTAAATGATGCATCACCGGTTTGTAAGGGTAATGAATATTACAAACAATCTTGCAGAAGGAGCCTTTCAAAGAAATTTCTTTCCAAGGAAATCAACAGTTTAATTGCCTCAGGGCCCGAACCTACTTCCCCCTTAAATCCTACTTCCCCGTTAAATGATTCAAGAAAGAGGAGAGAGATTAGTGATGTTCGAGTCTTGTATAGCCACCACTTGGATGATGATATTGTTAAGCAGCAGCAGAAGATTTTGAATCGGCTTGGAATTTCCATGGCAAATTCAATCACAGATTCCACACACTTTATAGCTGATAAATTTGTAAGGACAAGAAATATGTTAGAAGCTATAGCATTGGGAAAGCTAGTGGTAACACATTTATGGATAGATAGCTGTGGACAAGCTAGCTGTTTTATGGATGAGAAGAACTATATACTGAGAGATGCCAAAAAGGAAAAGGAATTTGGGTTTAAAATGCCCGTCTCTCTGGCTTATGCTCGCCAACGTCCACTTCTACAGGGTCGGAGAGTCTTGATTACTGAAAATACGAAGCCTGGGAAAGACATAATTTCTAGCTTGGTGAAGGCAGTGAAGGGCCAAGCTGTTGAGAGAATTGGCAGATCTGGTCTCAAGGATGATAAAATTCCTGATGATATCTTGGTTTTATCTTGTGAAGAAGATTACGATATTTGTGTGCCTATTCTCGAAAAAGGGGCTGCAATTTATAGCTCCGAGCTGCTTCTGAATGGGATCGTTACTCAAAAGCTGGAGTTTGAAAGGCATCATCTATTTGAAGATCACGTTAAGAGGACCCGTTCTACAATGTGGCTCAAGAAAAAAGATGGCGATACGTTTCTTCCTGTTTCTAAACATAAGTAA 3417 39.71 MSTFEVLLSIAEEQCLLFSDYNFPRIRKAVTKVYAVNPKMLLLISHDEIERMYPLGDDDFDTEINEFDSQLALSSFIGDDYLGDTVKDTPSCPEITVPFDDIASLDDVSDTQVMDLAGETQALDLVGETQTLDLAGETQALDLAGETQPLDLAGETQALDITGQTQEINFSGETQAMDFDGETPAIVLSGQTQQLDDPDFSSHSNGEATDITEVLKHVDNLIDDELVRRISHSVQDQVKEGVKGPIDALPDEKGTAGSLRFASLRAESLRASGLAAARRMAYKEIHTGSFLKTHTGSFLKSNGVSFGKDSSKVKEKDEKEPVKVVELNNENTFSVGSSTVRKLVFDDSVSEDMELSHRTEGEDLPPFHARDDQLAGLSYIDSQEPGDLSQVNALNFVDKFLENNAVDFDLEANLGKGTGEKLKSVHNAKGPQSLAKIVNSKTKVGESGIFEWDDKFEDETGGEILQRRKEELFNRSLTQPRKRNEMLNIHNVKRNKAHSDSRLLLQNLKENRKIAKHVAVKSKRNLAKEWDEQYKTDSSRGKCEGNVMDIEESTLLNVGVDTQLAAEAMEALFNGDGITDCDINDNHQCLQKPSKKRTVKSSMGNRNSSLKSKKSSFNKRVSISDVSCASRQVRKGSSVPSKKWYESIKQCETEPAMKKSNKGTSNADENMNCALNGVSSVMKRLLDEKVGEVSPIARRTRHSLLSNKFKTAENGLIDSEEPMNHLTEVRTLKKTRTSKGVRSSKLSYGNVPTSASDQSGELNYKLSGQDYQNMRKTRLSMYAIPLLSLGDNSVEGNLLKESLVKKADRKNDAELLSSSENTRLGESPRKKRKQSDPVDTTPDYCKTPVNDASPVCKGNEYYKQSCRRSLSKKFLSKEINSLIASGPEPTSPLNPTSPLNDSRKRREISDVRVLYSHHLDDDIVKQQQKILNRLGISMANSITDSTHFIADKFVRTRNMLEAIALGKLVVTHLWIDSCGQASCFMDEKNYILRDAKKEKEFGFKMPVSLAYARQRPLLQGRRVLITENTKPGKDIISSLVKAVKGQAVERIGRSGLKDDKIPDDILVLSCEEDYDICVPILEKGAAIYSSELLLNGIVTQKLEFERHHLFEDHVKRTRSTMWLKKKDGDTFLPVSKHK 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4673672 4679257 + Conep14aG0081000.1 Cone14ag0793 452642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 741 761 - -
Cone14ag0793 1138 Pfam BRCT domain, a BRCA1 C-terminus domain 1016 1103 IPR001357 -
Cone14ag0793 1138 SUPERFAMILY BRCT domain 903 1008 IPR036420 -
Cone14ag0793 1138 CDD BRCT_MDC1_rpt1 911 984 - -
Cone14ag0793 1138 Gene3D BRCT domain 899 1015 IPR036420 -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 592 616 - -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 824 839 - -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 595 616 - -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 814 850 - -
Cone14ag0793 1138 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 810 1110 IPR051579 -
Cone14ag0793 1138 ProSiteProfiles BRCT domain profile. 903 992 IPR001357 -
Cone14ag0793 1138 CDD BRCT_PAXIP1_rpt6_like 1017 1103 - -
Cone14ag0793 1138 SMART BRCT_7 906 982 IPR001357 -
Cone14ag0793 1138 SMART BRCT_7 1015 1100 IPR001357 -
Cone14ag0793 1138 Gene3D BRCT domain 1016 1117 IPR036420 -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 883 904 - -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 737 761 - -
Cone14ag0793 1138 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 902 992 IPR001357 -
Cone14ag0793 1138 MobiDBLite consensus disorder prediction 883 899 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0793 K20780 - - cit:102618575 692.575
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0794 Cone-Chr15:4866074 Cone14ag0793 Cone-Chr14:4673672 1.46E-135 transposed
Cone14ag0793 Cone-Chr14:4673672 Cone15ag0793 Cone-Chr15:4863406 8.13E-192 wgd
Cone14ag0793 Cone-Chr14:4673672 Cone20ag0905 Cone-Chr20:6537471 4.76E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32