Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0807 ATGGGTACATCTTCATCTGTTTCAACCTTCATACACCGCACTTCTCATCTTCGCCGGAATTCCAACTATCAGATTCGGAATCTCACCAAAGACGGTGATAATGGAAGCGGAGAGCTCAAACTCCATGTAAGTCTGCAACTCTCGCACTCGAACGCACCGCATCGTGGAGATTTCACTGAAATCGCGAAAGAAATTTGTAAGATTACGCGAACTAAACCTAGATGGGAACAGACTTTGATTTCTGATTACCCTTCTTTCAACTTCTACGATCCCCAGTTTTTTCATGAATTTTTGAATCAACAAGACAATGTTCTTCTTTCGCTTAGGTTTTTTCGTTACTTATACTCGCATCGCCATGAATTTCACCCCGATCCAGTGAGCTGTAACAAAATTTTCGATTCACTCGTTCGGGCTAACGCTTGTTCTGCTGCGAAATCTTTACTTGATGATTTCAATTTTAGCCCCGACCCAGGTTCTTTGGAAAGATATGTTCAATCTCTTTGTGAGGATGGAATGATTAAGGAAGCCACTGATGAACTTTACGAATTGAGAAGACTTGGTTTCTGTCCTTCAATAGAGACTTGGAATTTGGCTTTGTTCGGGTGTCTTAAGCTTGGTAAGACTGATTTGATATGGAAATTGTACCAAGACATGATTGAATCTAATGTTCTTGTGGATTTGAATGTCAATACGATTGGATACCTAATTCAAGCATTTTGCTATGATAAAAAATTCTCAAATGCTTATGAGCTCTTACGAAAAGTCTTAGAAGATGGAAGAGCTCCTCATAATGCTTCTTTTAACAAATTGATATCTGGTTTTTGTGTGGAGAAGGATTATATTAGAGTATCTGAACTTCTTCACACCATGATTGCAAAGAATTGTGCTCCGGATATTTTTACATACCAAGAAGTTATTAATGGTCTTTGCAAGAGAAGGAAAGGAATTGAGGGTTTTCGTGTTTTCAATGATCTTAAGGATCGAGGATATGCCCCGGATGTGGTTATGTACACAACTATGATTAACGGTCTTTGTAAGATGAGATGGATTGGAGAAGCTAGGAAACTGTGGTTTGAGATGATTGGTAAGGGATTTGTTCCAAATGAATACACATACAATGCATTGATAAATGGGTTTTGTAAGATTGGCGATTTAGAGGAGGCGAAAAGGCTTTACAAGGAGATGTGTGATAGAGGTTATAGAGAAAGCACAATTAGTTGTAATACCATGATTTATGGTTTGTGTCTCCATGGAAGAGCCAATGAAGCTCTTGAGTTATTTGAAGAAATGCCAAACAAGGGTTTACTTTGTGATTTGATAACATACAACTCTCTAATCCAAGGCTTGTGTAAGGAAGGGAAGATAGTTGAGAGTAGAAAAATGTTCAAGAAACTCCTTGAGCAAGGGTTAGAGCCGTCAGTTTCCTCTTATACTCCTATTATTGAAAAGCTTTGTCAAACAAAAGGTGTTCTAGAAGCAAAAGAATTGTGGAATGATATGCGAAATAGGGGTTTGGAACCTATGGCTTTCACTAGGGATCATATCATTTCTGGATTGTGTGATCAAGGGCTTGTTATGGAGGGGATGGAGTGGTTAGTTACAATGTTGAGGAGTAAGCTCCAACCGAAGAGTGTAACTTTTGAGAAAATGCTTCATTGTCTCTTGGAGATGGAAAGGATAGATGATTCTTTACTCGTTGTAGATTTCATGTTTAGGATCGGTTATCGACTCAAAGAATGTTTATGCTATTTGCTGGTGCGTAAACTCTGTAATGAGGCTCGTTTTGTTCAAACATCTCTCGCAGGGCTCCTGGACAGGAATTGA 1824 38.82 MGTSSSVSTFIHRTSHLRRNSNYQIRNLTKDGDNGSGELKLHVSLQLSHSNAPHRGDFTEIAKEICKITRTKPRWEQTLISDYPSFNFYDPQFFHEFLNQQDNVLLSLRFFRYLYSHRHEFHPDPVSCNKIFDSLVRANACSAAKSLLDDFNFSPDPGSLERYVQSLCEDGMIKEATDELYELRRLGFCPSIETWNLALFGCLKLGKTDLIWKLYQDMIESNVLVDLNVNTIGYLIQAFCYDKKFSNAYELLRKVLEDGRAPHNASFNKLISGFCVEKDYIRVSELLHTMIAKNCAPDIFTYQEVINGLCKRRKGIEGFRVFNDLKDRGYAPDVVMYTTMINGLCKMRWIGEARKLWFEMIGKGFVPNEYTYNALINGFCKIGDLEEAKRLYKEMCDRGYRESTISCNTMIYGLCLHGRANEALELFEEMPNKGLLCDLITYNSLIQGLCKEGKIVESRKMFKKLLEQGLEPSVSSYTPIIEKLCQTKGVLEAKELWNDMRNRGLEPMAFTRDHIISGLCDQGLVMEGMEWLVTMLRSKLQPKSVTFEKMLHCLLEMERIDDSLLVVDFMFRIGYRLKECLCYLLVRKLCNEARFVQTSLAGLLDRN 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4800948 4803226 - Conep14aG0082400.1 Cone14ag0807 452656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cone14ag0807 607 SUPERFAMILY HCP-like 204 472 - -
Cone14ag0807 607 Pfam PPR repeat family 403 451 IPR002885 -
Cone14ag0807 607 Pfam PPR repeat family 264 311 IPR002885 -
Cone14ag0807 607 Pfam PPR repeat family 332 381 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 194 226 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 440 474 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 476 507 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 300 334 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 335 369 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 370 400 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 266 299 IPR002885 -
Cone14ag0807 607 NCBIfam pentatricopeptide repeat 405 438 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cone14ag0807 607 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 492 595 IPR050667 -
Cone14ag0807 607 Gene3D Tetratricopeptide repeat domain 397 468 IPR011990 GO:0005515(InterPro)
Cone14ag0807 607 Gene3D Tetratricopeptide repeat domain 238 396 IPR011990 GO:0005515(InterPro)
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cone14ag0807 607 Gene3D Tetratricopeptide repeat domain 479 599 IPR011990 GO:0005515(InterPro)
Cone14ag0807 607 Gene3D Tetratricopeptide repeat domain 116 237 IPR011990 GO:0005515(InterPro)
Cone14ag0807 607 Pfam PPR repeat 476 505 IPR002885 -
Cone14ag0807 607 Pfam PPR repeat 194 223 IPR002885 -
Cone14ag0807 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0807 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010261 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 30