Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone14ag0840 | ATGCTGTCGAATCACCTGGAAAATGGGATCGAGACAGCTAAGCTCATGTGGTCACGGATACCGAATTCAGAGGATGGCGAGCCTGATCAGGTTGGGAACTTGAAGAAGAGCGATGGTGGTAGCGCGGAGAGCCTCGATTACGAGGTCATCGAGAATTATGCTTATTGGGAAGAGCAGGCACAGAGAGGCAAACTGTTTCTTGGATATTATGTGATGGTCAAGTGGATTTTTGCGTTGCTCATTGGAATCGGTACAGGACTGGCTGCCGTTTTCATAAATATTTCCGTCGAGAACTTTGCAGGCTGGAAGTTTGCATTGACATTTTCTATTATCCAGAAGTCTTATGTCGCTGGTTTTCTAGTATACATATTGATCAACTTGGCATTGGTCTTTTCTTCTGTCTATATCATCACTCATTTTGCACCAGCTGCTGCTGGATCCGGAATTCCTGAAATCAAGGGATATTTGAATGGCATCGATATCCATGGTGTCCTTTTCTTCAGAACCTTGATTGGGAAGATACTAGGAAGCATTGGTTCTGTCGGAGGTGGTTTGGCTTTAGGCAAAGAAGGTCCCCTTGTTCATACTGGAGCTTGTATTGCATCTTTGCTTGGACAAGGGGGATCCACCAAATATCATCTAAGATCCAGGTGGCTACAAGTTTTTAGGAGTGACCGAGATCGTCGTGATCTTGTAACCTGTGGATGTGCAGCTGGTGTTGCTGCTGCCTTTAGAGCTCCTGTAGGTGGTGTGTTGTTTGCACTGGAAGAAGTTACATCTTGGTGGAGGAGTCAACTTATGTGGCGTGTGTTTTTTACTTCTGCCATTGTCGCTGTTGTGGTCCGTACAACAATGGGCTGGTGTAAGAGTGGAAAGTGTGGACATTTTGGGTCTGGTGGCTTCATTATTTGGGACATATCAGATGGTCAAGAGGATTACTCTTTTGGGGAGTTGTTGCCAATGGCTGTTATTGGTGTTATTGGAGGCTTGTTGGGAGCATTATTCAATCAACTTACTCTTTACATAACTTATTGGCGTCGGAATTATTTGCACAAGAAGGGGAAGAGAGTCAAGATAATTGAGGCTTGTCTTATCTCGGTGCTAACATCAATTATCTCCTTTGGACTACCACTTCTAAGAAAGTGCAGTCCATGTCCAGAAGTAGATCCGATGTCTGGCATAGAATGCCCAAGACCTCCTGGGATGTATGGAAATTATGTAAATTTCTACTGCAGTAAAGACAAGGAATACAATGACTTGGCAACCATTTTCTTCAATACACAGGATGATGCAATAAGGAATTTGTTTAGTGCGAAAACAGTTCATGAGTTCAGCGCCCAAAGTTTGTTGACCTTTCTGGTTATGTTCTATACCTTGGCTGTTGTAACATTTGGCACTGCTGTGCCTGCTGGTCAATTCGTTCCTGGAATAATGATTGGATCTACATATGGCCGTCTAGTTGGAAAGTTTGTTGTTAACTTTTACCAGAAGCCCAACATTGAAGAGGGGACATATGCTCTTTTGGGGGCTGCTTCTTTTCTTGGAGGGTCTATGCGAATGACTGTCTCTCTTTGTGTCATTATGGTTGAAATCACTAATAACTTGAAACTCTTACCTCTCATAATGCTTGTTCTTCTCATATCAAAGGCAGTAGGTGATGCTTTTAATGAAGGCCTGTATGAAGAGCAGGCACAATTGAGGGGTATTCCCTTATTGGAATCGAGGCCGAAGTACCAGATGCGGAAAATAGCAGCAAAGGAGGCCTGTGGGAAAAGGGTGGTCTCCTTTCCCCGTGTGGTTAAAGTTGCAGACATGGTTTCTATATTGCGGAGCAACCAGCATAATGGATTTCCTGTGATTGATCACACAAGAAATGCAGAAACACTTGTAATTGGACTCATGCTTCGCAGTCATTTGTTAGGACTTCTGCAGTCAAAGGTTGATTTTCAGCATAGTCCTCTACCCTCTGATACGAGAGGAAGCTCCAGGCAGGTCAGGCACAATCTTAGCGAGTTTGTGAAACCCGCTTCAAGTAAAGGATTGTCTATAGATGATATACATCTTAGTTCAGATGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCTCCATACATTGTTCCAGAAGATATGTCTTTGACAAAGGTATATAATCTATTCCGACAACTAGGTCTGAGACATATATTTGTCGTTCCTCGACCCTCTCGTGTTATTGGTTTGATAACCAGAAAAGATCTGTTGATCGAGGACAATGAGGATTCAAACACGCTGGAACTTCAATCGACCACTGTAAGAACTCAGCATCGAGGTAAAAGGTTATACAATGGGACAACGGAGGAGGCAGAGCGTCCCCTTCTCAATGGTCTTCTGGTACAAAAATAA | 2391 | 43.33 | MLSNHLENGIETAKLMWSRIPNSEDGEPDQVGNLKKSDGGSAESLDYEVIENYAYWEEQAQRGKLFLGYYVMVKWIFALLIGIGTGLAAVFINISVENFAGWKFALTFSIIQKSYVAGFLVYILINLALVFSSVYIITHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKILGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRSRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTTMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMAVIGVIGGLLGALFNQLTLYITYWRRNYLHKKGKRVKIIEACLISVLTSIISFGLPLLRKCSPCPEVDPMSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTVHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVNFYQKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKIAAKEACGKRVVSFPRVVKVADMVSILRSNQHNGFPVIDHTRNAETLVIGLMLRSHLLGLLQSKVDFQHSPLPSDTRGSSRQVRHNLSEFVKPASSKGLSIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHIFVVPRPSRVIGLITRKDLLIEDNEDSNTLELQSTTVRTQHRGKRLYNGTTEEAERPLLNGLLVQK | 796 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 5213351 | 5221551 | + | Conep14aG0085700.1 | Cone14ag0840 | 452689 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone14ag0840 | 796 | FunFam | Chloride channel ClC3 | 67 | 383 | - | - | |
| Cone14ag0840 | 796 | Gene3D | - | 574 | 756 | IPR046342 | - | |
| Cone14ag0840 | 796 | SUPERFAMILY | CBS-domain pair | 578 | 750 | IPR046342 | - | |
| Cone14ag0840 | 796 | Gene3D | Clc chloride channel | 67 | 573 | - | - | |
| Cone14ag0840 | 796 | MobiDBLite | consensus disorder prediction | 21 | 41 | - | - | |
| Cone14ag0840 | 796 | SUPERFAMILY | Clc chloride channel | 52 | 574 | IPR014743 | - | |
| Cone14ag0840 | 796 | ProSiteProfiles | CBS domain profile. | 703 | 760 | IPR000644 | - | |
| Cone14ag0840 | 796 | SMART | cbs_1 | 706 | 754 | IPR000644 | - | |
| Cone14ag0840 | 796 | SMART | cbs_1 | 592 | 644 | IPR000644 | - | |
| Cone14ag0840 | 796 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | FunFam | Chloride channel protein | 663 | 752 | - | - | |
| Cone14ag0840 | 796 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 33 | 761 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cone14ag0840 | 796 | CDD | ClC_6_like | 43 | 572 | - | - | |
| Cone14ag0840 | 796 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 593 | 750 | - | - | |
| Cone14ag0840 | 796 | Pfam | Voltage gated chloride channel | 131 | 552 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone14ag0840 | 796 | Pfam | CBS domain | 704 | 750 | IPR000644 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0840 | Cone-Chr14:5213351 | Cone8ag0780 | Cone-Chr8:7787359 | 3.97E-225 | dispersed | |
| Cone14ag0840 | Cone-Chr14:5213351 | Cone12ag0789 | Cone-Chr12:7236184 | 9.59E-226 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone14ag0840 | K05016 | - | mdm:103453107 | 1326.23 |