Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0851 ATGGAAGACGGGGTGAGATCTGGCGGCCATTCAGGGGTTTTGGTGAAGATTAGGAGTTCGTCGGGTTGTTTAATTGTCAGAAAGAAAGGTGACGGGGTTGGAGCTACTGTTGGCTCATCAGGATCCAGAAAGCCATTTGAATCGAAGAAGGAGAAGAAGAGACCGAGGTTGGTTTTGAGGGATTCAAGTTCTAGCGAGGATGAGTGTTTGGTGCCTCCTCGTAGACGAGTTGGTCCTGAAACGATAAGAGTTTGTAATGGATTAAATGCTTTTGAGAAGGGAAGCTTTGATGAGAGTGGAATTAGCTGGAAGAAGAACAATTCACAATATATTGATCATGATGAAGATCTACTGATAAGCAGAGGCATGGAAGATGAGTTTCCGAGAAAGAGAAGTAAGTTAGATGTGTTTGAGTTCAACGAGTATGATGGAATTGGCGGGGAAGTGTTAAGGAGGAAACATGTTAATGAGAATGGATCAATGCACTTGCCTCGAAATGGAATTGAGAGAGAAGGGGAGACCAGTTCTGGAAGACACTTAGGTGAGAAGAGAAAGAATTTGTATCTAGATCGCAGTAGTGGGTTTAATAGAGATTATCACTCTGAAGCTCAAATTCCTACACCTCTCTTGAGAGAAAAGTTCATGGGTCATTCTGACGAACCAATTAGAGTTCAGGGCAAAAATGGTGTTTTGAAGGTTATGATACACAAGAAGAAGAATGTGGGGCCGCCTCTTGAGATGTTCGATCATCGAAAATTCGACAACAACAGAATGAGTTTGAGGGCCGAAGATGTTCCGAAGAGAAATGTTGTAATCACTCCTCCGCCTTCAGTTTTCTTGGAACCAAAGACAACTGTGAAACGAGGTCCATTTGCTAGCCCGGAGAAGGATCGTATGAACTTGCAAACATCATTGTCAACAAAGAGTGGTAAGGGCCTTAGTGGGGACTCAGGGGACAGTGACGTGTCACTGAAGCCAGGAGCAAAGGCTACAAAAGCTATAAAGCCTATGAAGAGGGCAGGCCGAGAAGTTGAAAAAACTCCTTTTGAAAATTCCCCTCCGGATGTTGTAAAAGAAGGAAAAGTGAAACGTGGGAGTGGCACAGAAAAGCAAAAGCTTCGAGAACGGATAAGGGGAATGCTTCTTGAGGCTGGCTGGACGATAGACTATAGGCCTAGAAGGAACAGAGACTACCTAGATGCAGTGTATATAAATCCCAGTGGAACAGCTTACTGGTCCATTATCAAGGCTTATGATGCTCTTCAGAAGCAATTAAATGAAGAGGCCGATATAGCTAAATCAATAGGTGATGGTTCTTCGTTTGCCCCAATAGCAGATGAAGTACTTGGCCAGTTAACAAGGAAAACTCGGAAGAAAATGGAGAAACAAATGAAAAGGAAGCAGAGGGAATACAGTGATAGTGAAGATGCGAAAGACGCGGTCATGAAATCTTCCGGTACCAAATATTGTGCAGAGAGCATGGACAGTGATAGCCAGGAGGAGAAACTAAGTTCTTTCTTAAAGCAAGGTAGCAAATCATCGAAGAGTAGAGCAAATGAAAATGGTTCTATAAGTGGAAACCCAAAAGGGCAAAACTCAAATAATCACTTACATGGAAGAAAAAGTAGAAAACTTGGATTGTTAGTCCGTGGTTCTAACAAGGGGCTAAATTCGGAGGGTGATGGGTATGTTCCATATACTGGAAAGAGGACACTTCTTTCCTGGCTGATTGACTCTGGAACTGTTCAGTTGAGCCAAAAGGTTCGATATATGAACCGGCGTCAAACAAGAGTCATGTTGGAGGGCTGGATTACAAAAGATGGCATTCATTGTGGTTGCTGTAGTAAAATCCTCACTGTTTCAAAGTTTGAGATACATGCTGGAAGCAAATTGCGCCAACCCTTTCAAAACATATTTTTAGAATCTGGGGTTTCCCTTCTGCAATGCCAGATAGATGCGTGGAGTAAGCAAGAAGAGTCGAAACGGCTTGGATTTAACTCCATTGAAATTGATGGTGATGATCCAAATGATGATACTTGTGGCATCTGTGCGGACGGTGGGGACTTAATCTGCTGTGATGGTTGTCCCTCAACCTTTCATCTAAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGTCCAAACTGTACTTGCAAATTTTGTGGGTGTGTCACTCTTGATGCTCAAGGGGGCAGTATCCCGGGTTCTGCACTATTCACTTGCAACTTGTGTGAGAAAAAATATCATGTATCGTGCGTTCAGGATATGAATACTCATCCTGCTAGCTCCAATAGTATGCTCACATCTTTTTGTGGACAGAAATGTCGAGAGCTTTTTGAGCATTTGCAGAAGTATCTTGGGGTCAAACATGAACTGGATGCAGGTTTTTCATGGTCGCTTGTTCGAAGAACTACTGAAGATTCAGATACCTCTGTTCGCGGACTTTCTCATAGGGTGGAATGCAACTCTAAGCTAGCTGTTGCACTAATGGTTATGGATGAATGCTTTTTGCCCATTGTTGATAGAAGGAGTGGAATCAATATAATTCATAATGTTCTTTATAATTGTGGATCAAACTTTAACAGGCTGAACTATAATTGCTTTTACACTGCTATTTTGGAGAGGGGCGATGAAATAATTTGTGCAGCATCTATCAGATTCCACGGGACGGAGTTAGCAGAGATGCCATTCATCGGAACTCGCCATATATACAGACGTCAAGGGATGTGTCGTCGCCTTCTTGGCGCTATTGAAACAGCTCTCAGCACATTCAAGGTCAAGAAACTGGTTATACCTGCAATTGCTGAACTCATGCATACATGGACTGTAGTTTTTGGTTTCACTTCTCTCGAGGAATCCCTCGAGGAAGAAATGAGATCAATGAATATGTTAGTGTTCCCTGGAACGGATATGTTACAGAAGCTGTTATTGGAAGAAGAAATTTTGGAAGAGAATAAGGCTTCTAACACAGGTGCACTTGCTGTCACTGATTCTGGGACAGATTGCTTGGTTTCTCCCCTGAAAGATACATCTTTGATTAGTTCAGTTGATGCTATTCCTGAAGTTAAATCTTCAATTTTGACTAAGGCGACCATAAATTCAGACTCTCATAATGGGAAGAAATCAGTTGAAGATACTGATGAGAAATATCCATCCCCATCTGATATGAACTGTGAAACAGTCCAGAAGAATATTAAACCGGAACTAAGTTCTGCTGCAGAAGATTACAATCAATCTCAGACAGAATGTACAGGTGGCTCATCAAGTGATATTTCCATGATGAGTAATCCATCAGAGGAAACTCCTTGTGAATGTAAACTTCCAGGCTCAATTGAAGAAACTCTAAATTCTCATTCTCATTTAGCGGAAGTACTGCCGAAGTCTGACTTCAATTCGAAAAGCCTGTCTCCAATTCCTGGTTCAATTGAAAGCGGACTATGTTCTGGCCCTCATTCAGGGGAAGAAGTGCTTGAATGTGAAAACAAGGATGAGTTCCTGTCTCCAATTAGAGTTTCGATTGAAGGAACAAAATGTTCCGACTCCCATATAGGGAAAGAGTTTCCTGAAACTGACATCAACACAAAGTGCCCATCTCCAATTCCATGTTCAATTGACGAAAAAATATGTTCTGACACAAATTCAGATGAAGTGGTGCCTGAATCTGACTTCAGAACAAAAAGCCTGTCTTTAATTCCAGGTTCTCCAACCGAAGAAAGAATATGTTCTGAAACTCATTCAGAGAAAGAATTGCCTGAAACTGACGTCAGTAGGAAAAGCCTGTCTCCTACTAATGAGAATGAAAATAATCAAGTATCTGATTCTTCCATTAAAAACAATCCAAAGTCTTCTAATGAAAGCAACCTGCACAATAATATCCTGGAAGGAAATGATAGTACCCATCTAGTAATCAATGCTAACCCTGGTCTCTCTGGCTTTGGGGATGCTAATGATATTCCCCTGGATTCAGACAATCAAAAAGTTGAAGAAACAGATAGCAAATTATCTGGTGGGGCTTCATTGCCTACCTCTCATGCAATCTATTGCAGTGCAAGATTGGTACATACATCTCAGACTAATAATCGAGAAGCGCAAAGTGAATCTGGTTCCATCTGA 4119 41.71 MEDGVRSGGHSGVLVKIRSSSGCLIVRKKGDGVGATVGSSGSRKPFESKKEKKRPRLVLRDSSSSEDECLVPPRRRVGPETIRVCNGLNAFEKGSFDESGISWKKNNSQYIDHDEDLLISRGMEDEFPRKRSKLDVFEFNEYDGIGGEVLRRKHVNENGSMHLPRNGIEREGETSSGRHLGEKRKNLYLDRSSGFNRDYHSEAQIPTPLLREKFMGHSDEPIRVQGKNGVLKVMIHKKKNVGPPLEMFDHRKFDNNRMSLRAEDVPKRNVVITPPPSVFLEPKTTVKRGPFASPEKDRMNLQTSLSTKSGKGLSGDSGDSDVSLKPGAKATKAIKPMKRAGREVEKTPFENSPPDVVKEGKVKRGSGTEKQKLRERIRGMLLEAGWTIDYRPRRNRDYLDAVYINPSGTAYWSIIKAYDALQKQLNEEADIAKSIGDGSSFAPIADEVLGQLTRKTRKKMEKQMKRKQREYSDSEDAKDAVMKSSGTKYCAESMDSDSQEEKLSSFLKQGSKSSKSRANENGSISGNPKGQNSNNHLHGRKSRKLGLLVRGSNKGLNSEGDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITKDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQIDAWSKQEESKRLGFNSIEIDGDDPNDDTCGICADGGDLICCDGCPSTFHLSCLDIQIPPGDWHCPNCTCKFCGCVTLDAQGGSIPGSALFTCNLCEKKYHVSCVQDMNTHPASSNSMLTSFCGQKCRELFEHLQKYLGVKHELDAGFSWSLVRRTTEDSDTSVRGLSHRVECNSKLAVALMVMDECFLPIVDRRSGINIIHNVLYNCGSNFNRLNYNCFYTAILERGDEIICAASIRFHGTELAEMPFIGTRHIYRRQGMCRRLLGAIETALSTFKVKKLVIPAIAELMHTWTVVFGFTSLEESLEEEMRSMNMLVFPGTDMLQKLLLEEEILEENKASNTGALAVTDSGTDCLVSPLKDTSLISSVDAIPEVKSSILTKATINSDSHNGKKSVEDTDEKYPSPSDMNCETVQKNIKPELSSAAEDYNQSQTECTGGSSSDISMMSNPSEETPCECKLPGSIEETLNSHSHLAEVLPKSDFNSKSLSPIPGSIESGLCSGPHSGEEVLECENKDEFLSPIRVSIEGTKCSDSHIGKEFPETDINTKCPSPIPCSIDEKICSDTNSDEVVPESDFRTKSLSLIPGSPTEERICSETHSEKELPETDVSRKSLSPTNENENNQVSDSSIKNNPKSSNESNLHNNILEGNDSTHLVINANPGLSGFGDANDIPLDSDNQKVEETDSKLSGGASLPTSHAIYCSARLVHTSQTNNREAQSESGSI 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5399179 5407279 + Conep14aG0086800.1 Cone14ag0851 452700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1258 1294 - -
Cone14ag0851 1372 Pfam Domain of unknown function (DUF7028) 356 424 IPR054292 -
Cone14ag0851 1372 SMART PHD_3 679 719 IPR001965 -
Cone14ag0851 1372 SMART PHD_3 724 778 IPR001965 -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 455 544 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 31 72 - -
Cone14ag0851 1372 CDD PHD2_CHD_II 680 718 - -
Cone14ag0851 1372 Coils Coil 457 477 - -
Cone14ag0851 1372 SUPERFAMILY FYVE/PHD zinc finger 669 725 IPR011011 -
Cone14ag0851 1372 PANTHER PHD FINGER PROTEIN 12 303 1085 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 158 185 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 281 371 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 465 482 - -
Cone14ag0851 1372 Pfam Tify domain binding domain 602 652 IPR032308 -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 44 72 - -
Cone14ag0851 1372 ProSiteProfiles Zinc finger PHD-type profile. 677 721 IPR019787 -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1035 1059 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 356 371 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 297 316 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1081 1107 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1040 1054 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1316 1340 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1081 1101 - -
Cone14ag0851 1372 Pfam PHD-finger 680 718 IPR019787 -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1242 1257 - -
Cone14ag0851 1372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 733 IPR013083 -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 1215 1294 - -
Cone14ag0851 1372 MobiDBLite consensus disorder prediction 503 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0851 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0851 Cone-Chr14:5399179 Cone6ag0187 Cone-Chr6:892098 5.71E-119 dispersed
Cone15ag0832 Cone-Chr15:6066986 Cone14ag0851 Cone-Chr14:5399179 0 transposed
Cone14ag0851 Cone-Chr14:5399179 Cone17ag0558 Cone-Chr17:2831597 8.00E-207 wgd
Cone14ag0851 Cone-Chr14:5399179 Cone20ag0858 Cone-Chr20:6259379 9.11E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44774 PF13178 DUF4005 2.50E-07 No_clan Cone TR