Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0857 ATGGGCCTGTTTGATGATGTATTTCGGCTCTTTGAAGGGATGAAGAGCTCAAAAATAGAGCCAGATGAGATGATTTTATCAACCATTCTTTCTGCCTGTGGAAGAGCTGGTAATTTAACCTATGGAACAGCAATTCATGACTTCATTACTGAGAATGATTATATTCTAATTGATCCCCACTTACAAAGTGCTCTTATAACCATGTATGCAAGATGTGGATCCATGGATTTAGCTCAGAATCTGTTCACTAAACTGTCAGAAAAAAACTTAGTTGTTTCAACTGCCATGGTAACTGGCTACTCAAAACTGGGACAGGTAGAGAAAGCACGTTTAATATTCAACGAAATGGGTGAGAAGGACTTGGTTTGTTGGAGTGCAATGATATCTGGTTATGCAGAGAGTGATCAACCTCAAGAGTCTCTTAAACTATTTGACGAAATGCAGGTGCAACGTATTAAACCTGATAGAATCACCATGCTAAGTGTTGTTTCTGCTTGTGCTCATCTGGGTGCACTAGATAAAGGCAAATGGGTCCATAGATATGTTGATAAGAATGGATTTGGAGGAGCTTTGTCTATCAATAATGCCCTTATTGATATGTATGCAAAATGTGGTTGTGTAGAAAGAGCAAGAGGAGTTTTTGAGAAGATGCCGAATAGAAATGTGATATCGTGGACAACTATGGTCAATTCGTTTGCTATTCATGGAGATGCGATTAATGCGCTAAGCTTGTTTAATCAAATGAAAACTCGAAATATTGAACCCAATGGGATCACGTTTGTGGGTGTTCTTTATGCTTGTAGCCATGCTGGGTTGGTAGAACAAGGAAGAAAAATCTTCACTTCCATGGTTAGTGAACATAATATCACTCCAAAACATGAGCACTATGGATGCATGGTTGATCTCTTAGGTCGTGCTAAACGTTTAAGAGAAGCCCTTGAAATCATAGAAACAATGCCTTTGGCTCCTAATGTTGTCATATGGGGATCTTTAATGGCGGCTTGTCAGATTCAGGGTGAGACGGAGCTAGGCGAATTTTCTGCAAAGCAAGTTCTTAAGCTCGATCCTAATCATGATGGGGCCCTTATTGTCTTATCGAATATATATGCGAAAGGGAGGAGATGGGAAAGTGTCAGTGAATTGAGGAGACTAATGAACCGTAAAGGCATATCCAAGGAGAAAGGGTCTAGTAGAATCGAAATGAACAATGAGGTGCATGAGTTCTTGATGGCTGACAGGAATCATAAACAGGCAGATCAGATCTATGAGAAGTTAAATGAGGTAATTAGGGAGTTGAAAAAGGTGGGTTATAGTCCGAATACTGGATGTGTGCTGGTAGATTTAGACGAGGAAGAAAAGAAGGAAGTGGTTCTTTTGCATAGTGAGAAGTTGGCACTTTGTTACGGGCTAATTAATGATGGATTATCATGTGTTCGAATTATTAAGAATCTTAGGATTTGTGAAGATTGTCATACTTTTATGAAACTTGTTTCAAGGCGGTATGAGAGAGAGATTGTTATAAGAGATAGAACAAGGTTTCATCATTACAAAGATGGTGTTTGTTCTTGTAAGGACTATTGGTAA 1584 39.02 MGLFDDVFRLFEGMKSSKIEPDEMILSTILSACGRAGNLTYGTAIHDFITENDYILIDPHLQSALITMYARCGSMDLAQNLFTKLSEKNLVVSTAMVTGYSKLGQVEKARLIFNEMGEKDLVCWSAMISGYAESDQPQESLKLFDEMQVQRIKPDRITMLSVVSACAHLGALDKGKWVHRYVDKNGFGGALSINNALIDMYAKCGCVERARGVFEKMPNRNVISWTTMVNSFAIHGDAINALSLFNQMKTRNIEPNGITFVGVLYACSHAGLVEQGRKIFTSMVSEHNITPKHEHYGCMVDLLGRAKRLREALEIIETMPLAPNVVIWGSLMAACQIQGETELGEFSAKQVLKLDPNHDGALIVLSNIYAKGRRWESVSELRRLMNRKGISKEKGSSRIEMNNEVHEFLMADRNHKQADQIYEKLNEVIRELKKVGYSPNTGCVLVDLDEEEKKEVVLLHSEKLALCYGLINDGLSCVRIIKNLRICEDCHTFMKLVSRRYEREIVIRDRTRFHHYKDGVCSCKDYW 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5462025 5463608 + Conep14aG0087400.1 Cone14ag0857 452706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0857 527 Pfam E+ motif 405 432 IPR046849 -
Cone14ag0857 527 NCBIfam pentatricopeptide repeat 223 256 IPR002885 -
Cone14ag0857 527 NCBIfam pentatricopeptide repeat 94 122 IPR002885 -
Cone14ag0857 527 NCBIfam pentatricopeptide repeat 195 221 IPR002885 -
Cone14ag0857 527 NCBIfam pentatricopeptide repeat 122 155 IPR002885 -
Cone14ag0857 527 Gene3D Tetratricopeptide repeat domain 90 193 IPR011990 GO:0005515(InterPro)
Cone14ag0857 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cone14ag0857 527 Pfam PPR repeat family 220 268 IPR002885 -
Cone14ag0857 527 Pfam PPR repeat family 120 168 IPR002885 -
Cone14ag0857 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 119 IPR002885 -
Cone14ag0857 527 SUPERFAMILY TPR-like 100 379 IPR011990 GO:0005515(InterPro)
Cone14ag0857 527 FunFam Pentatricopeptide repeat-containing protein chloroplastic 45 190 - -
Cone14ag0857 527 Pfam E motif 340 400 IPR046848 -
Cone14ag0857 527 Pfam DYW family of nucleic acid deaminases 436 527 IPR032867 GO:0008270(InterPro)
Cone14ag0857 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Cone14ag0857 527 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 89 170 - -
Cone14ag0857 527 Pfam PPR repeat 295 319 IPR002885 -
Cone14ag0857 527 Pfam PPR repeat 63 89 IPR002885 -
Cone14ag0857 527 Coils Coil 415 435 - -
Cone14ag0857 527 Gene3D Tetratricopeptide repeat domain 194 456 IPR011990 GO:0005515(InterPro)
Cone14ag0857 527 Gene3D Tetratricopeptide repeat domain 1 89 IPR011990 GO:0005515(InterPro)
Cone14ag0857 527 FunFam Pentatricopeptide repeat-containing protein At4g14820 194 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0857 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0857 Cone-Chr14:5462025 Cone1ag0577 Cone-Chr1:5814647 2.17E-136 dispersed
Cone14ag0857 Cone-Chr14:5462025 Cone2ag0377 Cone-Chr2:1987219 4.17E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .