Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0862 ATGGGCACTGTTGGTAACAAGTGGGACGATGACGAATGCTGCTCTGTGATAGGAGACAAAGGAGAGATCGGGTTTATTGATTATGGGGATGACAAGTCTGTATGCAGTTACAATCCTAATGAGGAGGGACCTATCATCATTTCCTATCCATTTGTTTTTGTTGATGGGAAACCTCAATCCATAATTGTGGGAAAAACAGCAGCAGAGTCAATTACTATCCAGAACACTACAGATGAGCCGGTAGATCTATGGGCTGTTAAAATTTATGCCTCAAATCCTGAGGACTCTTTCACACTTTCCATAATCGAGCCTCCATCGGAAAATGCTGATATTGAAAATATTACTGGTTTCGTAGAGGCTTTTACTCTGGAAGATAGAATGCTTCAACCAGGTGAAAAATTGATTGTTTGGCTGTCTTGTAAGCCAAAGGAGCTTGGTTTACACACTTCGGTTGTGCATTTTGATGTGGGGGATGAGCAAATAGAACGGGTGGTTTTTCTCTTAGCTGATGATAAGATCTCTCAATCTTTAGTCTCCAAAAAGCCTTACATAAGAGGTAAAAAAAAGAACCCCCACCATATTCCTGTTGATGCATATGTCTCTGGTTCTCGCCCTGATAGAAATACGGATCGAACCTTTAAAAAATGGCTTCCTCATTATGACATTCCAAAGGACATTCGAGAGTTGCTTCAAAATAAGCAGATACCTGATGCTGTCATGCAAGGATTTACTAAAGAAAATTATTCTTCGTACTTCAGAACATTAGTTATCATGGAAGAAATACAATTGGAGGAGGATATGAGGGCTTATGACATGGAAAATGTTGCCATGAAGAAGAGGAATCAGTTTTTGACGCTTGAGGTTCCTGGTCTTGCAGAGAGAAGGCCTTCACTTGTCCATGGAGATTTTATTTTTGCCAGGCCTTTGAATGAAACTTCAGTATTTCAGGGTTACATTCATCGTGTTGAGGCTGATGAGGTTTACCTGAAGTTTGCCTCAGAATTTCACATCCGCCATAGAATTGGGGACCTCTATAACATCAATTTCACTTATAACAGGATCAATATGAGGAGGGAATATCAGGCCATCAAGGCTGCGGAACATTTGGCACCGGAGTTTCTATTTCCATCTGAATTTTCTGGAAAGAGGCAGATTTTGACAACTCCTTTTATTCCTATATCTCACAACCTTAATGAGGAACAAACCCTCGCAATCGAGAAGATTTTAGGATGCAAAGGAGCACCTCCTTATTTGATCCATGGACCTCCTGGAACTGGCAAGACAATGACCCTAGTGGAAGCTATTCTCCAGCTCTATACAACCCGAAAAAATGCTCGGATTCTTGTTTGTGCACCTTCAAATAGCGCAGCAGATCATATACTCGAGAAAATCCTAGCTGAGAAGGACCTTAGAGTTCGAGAAAATGACATATTTAGGCTCAATGCAACGACTCGTCCATATGAAGAAGTAAAGCCAGATCATCTTTGCTTCTGTTTCTTTGATGGAAAAATCTTCCAATGCCCTCCTTCTGAAGCTCTCATGTGCTATCGCATCATCATATCGACTTATATGAGCGGTGCTCTTCTTTATGCGGAAGGAGTTAAACAAGGTCACTTTTCTCACATTTTCATGGATGAGGCTGGCCAAGCTTCCGAACCGGAAACTATGATCCCCATATCTAATTTCTGCCTGAAGAAGACAGTTGTAGTTCTTGCTGGTGATCCTATGCAGTTAGGTCCTGTAATATACTCCAAACAGGCCGACAATTACGGATTGGGAAAATCATATCTTGAGAGGTTGTTTGAATGTGAAAACTATTGTGGAGATACAAATTATATAACAAAGTTGGTCCGAAATTACAGATGCCACCCTGCTATTTTGCATCTTCCTTCCAATCTGTTCTACAGTGGTGAATTACTTGCATGTAAGGAAGACACAATGAAAAATGATGATGATTGGCTCAACATCCTTCCTAACAAGGATTTTCCAGTTCTTTTCTTTGGTATACAGGGATGTGATGAAAGGGAAGGGAATAACCCATCATGGTTTAATCGAATCGAGGCAAGCAAGGTCATAGAGGTTATAAAGAAACTGACAGCCAGTGGAACTTTGAGTGAGGAGGATATCGGGGTGATTACCCCTTATAGGCAACAAGTGACCAAAATAAAGAAGACCCTTGATGACTTGGATATGGTTGATGTTAAAGTTGGTAGTGTCGAGAATTTTCAAGGGCAGGAGAGGAAAGTGATTATCATATCTACTGTTCGGTCAACTATCAAACACAATGAGTTTGATCGAACCTTCTGTTTGGGATTCTTGAGCAATCCAAAGAGGTTTAATGTTGCTGTTACTAGGGCTATATCCCTTCTTATCATAATTGGCAATCCACATATTATCAATAAGGATACCTATTGGAACAAGCTTTTATGGCATTGTGCAGACAACAACTCCTATCAGGGTTGTGGTCTCCCTGAGCCGCAGGACCTTCTTGAAGAGGCTCCAATTCCGAACCATAACTTAAACTACGATGGAGGAGATAATCCTCCGGCTCCTGAAGGTGATGGATGGAATGAAGATCTGCCCGCGGAAAATTCTAAGCCAGACGATCACTTAAACTATTATGGAGAAAAGAATCATGCTGCCTCTAAAGGCGATGGATGGAATGAAGAGTCATGGTGCAGAGAAACTTCTAAACCAGTTACAGATGAAGCTGAGTGGTCTGATGGCTGGAAGTGA 2736 41.23 MGTVGNKWDDDECCSVIGDKGEIGFIDYGDDKSVCSYNPNEEGPIIISYPFVFVDGKPQSIIVGKTAAESITIQNTTDEPVDLWAVKIYASNPEDSFTLSIIEPPSENADIENITGFVEAFTLEDRMLQPGEKLIVWLSCKPKELGLHTSVVHFDVGDEQIERVVFLLADDKISQSLVSKKPYIRGKKKNPHHIPVDAYVSGSRPDRNTDRTFKKWLPHYDIPKDIRELLQNKQIPDAVMQGFTKENYSSYFRTLVIMEEIQLEEDMRAYDMENVAMKKRNQFLTLEVPGLAERRPSLVHGDFIFARPLNETSVFQGYIHRVEADEVYLKFASEFHIRHRIGDLYNINFTYNRINMRREYQAIKAAEHLAPEFLFPSEFSGKRQILTTPFIPISHNLNEEQTLAIEKILGCKGAPPYLIHGPPGTGKTMTLVEAILQLYTTRKNARILVCAPSNSAADHILEKILAEKDLRVRENDIFRLNATTRPYEEVKPDHLCFCFFDGKIFQCPPSEALMCYRIIISTYMSGALLYAEGVKQGHFSHIFMDEAGQASEPETMIPISNFCLKKTVVVLAGDPMQLGPVIYSKQADNYGLGKSYLERLFECENYCGDTNYITKLVRNYRCHPAILHLPSNLFYSGELLACKEDTMKNDDDWLNILPNKDFPVLFFGIQGCDEREGNNPSWFNRIEASKVIEVIKKLTASGTLSEEDIGVITPYRQQVTKIKKTLDDLDMVDVKVGSVENFQGQERKVIIISTVRSTIKHNEFDRTFCLGFLSNPKRFNVAVTRAISLLIIIGNPHIINKDTYWNKLLWHCADNNSYQGCGLPEPQDLLEEAPIPNHNLNYDGGDNPPAPEGDGWNEDLPAENSKPDDHLNYYGEKNHAASKGDGWNEESWCRETSKPVTDEAEWSDGWK 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5477524 5481461 - Conep14aG0087900.1 Cone14ag0862 452711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0862 911 Gene3D - 620 821 IPR027417 -
Cone14ag0862 911 FunFam Probable RNA helicase SDE3 346 491 - -
Cone14ag0862 911 Pfam Helicase MOV-10, beta-barrel domain 270 349 IPR049080 -
Cone14ag0862 911 CDD DEXXQc_Helz-like 397 621 IPR026122 GO:0003723(InterPro)|GO:0032574(InterPro)
Cone14ag0862 911 MobiDBLite consensus disorder prediction 859 911 - -
Cone14ag0862 911 FunFam Probable RNA helicase SDE3 621 821 - -
Cone14ag0862 911 CDD SF1_C_Upf1 622 812 IPR047187 -
Cone14ag0862 911 Pfam AAA domain 593 796 IPR041679 -
Cone14ag0862 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 811 IPR027417 -
Cone14ag0862 911 MobiDBLite consensus disorder prediction 833 911 - -
Cone14ag0862 911 Pfam AAA domain 516 585 IPR041677 GO:0004386(InterPro)
Cone14ag0862 911 Pfam AAA domain 396 489 IPR041677 GO:0004386(InterPro)
Cone14ag0862 911 Gene3D - 332 607 IPR027417 -
Cone14ag0862 911 PANTHER DNA2/NAM7 HELICASE FAMILY 233 856 IPR045055 GO:0005829(PANTHER)|GO:0035194(PANTHER)|GO:0043186(PANTHER)
Cone14ag0862 911 FunFam Probable RNA helicase SDE3 508 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0862 K18422 - - csv:101209925 1235.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0862 Cone-Chr14:5477524 Cone17ag0601 Cone-Chr17:3232269 2.04E-34 dispersed
Cone14ag0862 Cone-Chr14:5477524 Cone8ag0446 Cone-Chr8:2827246 1.84E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34