Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0866 ATGGCGTCGATTCTTCGGCGAACGATTTTGTCTCTAGGAGTTTTTCGTACTCTTCAAGGTGATGTTGCAGCCTTGAAGATGGACTTGGAATTGAAGTTTATAACTTTTTCTAGCATTTCTGATACAATAAGGCATCATAGTACCCATGGAAGTTCCAAAAAGTTTGACTTTACAGACCTGACCTCTCCTCATATGTGGTATCCAAATGCTCGGAAGAAACGTCGCAAAGTTATTTTGCATGTTGGCCCTACAAATAGTGGCAAAACACACCATGCTCTACAGAATCTTGAATCAAGCTCTTCTGGTATATATTGTGGTCCTTTGAGATTGTTGGCTTGGGAGGTGGCCAAACGCTTGAATAAGGCAAAAGTTCCTTGTGATCTAATTACAGGACAAGAGAGAGAGGAGGTTGATGGTGCAAAGCACAAGGCGGTGACAGTTGAAATGGCTGATGTAACCACTAACTATGATTGTGCTGTTATTGACGAAATTCAGATGTTGGGGTGTAAAACAAGGGGGTTTTCCTTTACACGCGCACTTCTAGGACTTTCTGCTGATGTGCTTTACCTTTGTGGAGATGCAGCAGCTGTTCCTCTTATTCAGGAAATACTGGAAGTGACTGGTGATGATGTTGAGGTTCAATACTTCGAAAGGCTTTCACCTCTCATTTTTGTGGAGGTTCCTCTCGGATCCTTTTCCAACATTAGAAGGGGTGATTGTGTCGTAACTTTTTCCCGCCACAACATATATAAATATAAGAGACAAATTGAAAGTGGGGGAAAGCATCTGTGTTCTGTAGTTTATGGTTCGTTGCCACCAGAGACTCGAACAAGACAGGCCACTATGTTCAATGACACAACCAGTGAGTTCGATGTTCTTGTGGCTAGTGATGCCATAGGGATGGGTCTTAATCTGAACATCTCTAGGATCATATTTTCAACAGCAAAGAAATTTGATGGTGTAGAGATGCGAGATCTCACCATTCCAGAAATCAAGCAAATTGCAGGAAGAGCTGGCAGGTATGGGTCAAAATTCCCTGTTGGTGAAGTAACGTGCCTTGATGGAGACGATCTACCCTTAATTCACTCAGCCCTAAAGGCTTCATCACCCCCAATAGAGCAAGCTGGCTTATTCCCCACCTTTGACCTCATGTTTCTCTATTCGCGATTACACCCAAAATATGGACTGCAACAAATATTGGAACACTTCGTTGAGAATGCCAAATTGTCGGAAAATTATTTCATTGCTAATTGTGAAGAGACGTTGAGAGTAGCTACTATCATTGATGAGTTGCCTCTTAGTTTGCACGATAAGTACCTATTCTGTATCAGTCCAGTTGATATGGATGATGAAATTACCACTCAAGGTCTAACTCAGTTTGCCGAAAGTTATGCAAATAAGGGCATTGTTCGGCTAAGAGAAATATTTACGCCAGGCTCAATTCAGGTGCCAAAAACGCAAGCTGCACTTAAGGATCTCGAATCTATTCACAAGGTGTTGGATCTCTATGTTTGGTTGAGTTTCCGATTGGAAGAATCATTCCCGGACCAGGAAGTGGCATCTGCTCAAAAGGCCATTTGCAACTTGTTGATTGAAGAATTTCTCGAGAGACTTGGATGGCAAAGGCCGCAGTCAAGAAGGTTATCAACATCTCGCATCCGCTCAACTTCCCTCTTATCCCACAATATCAGATCACATCTTTAA 1704 42.37 MASILRRTILSLGVFRTLQGDVAALKMDLELKFITFSSISDTIRHHSTHGSSKKFDFTDLTSPHMWYPNARKKRRKVILHVGPTNSGKTHHALQNLESSSSGIYCGPLRLLAWEVAKRLNKAKVPCDLITGQEREEVDGAKHKAVTVEMADVTTNYDCAVIDEIQMLGCKTRGFSFTRALLGLSADVLYLCGDAAAVPLIQEILEVTGDDVEVQYFERLSPLIFVEVPLGSFSNIRRGDCVVTFSRHNIYKYKRQIESGGKHLCSVVYGSLPPETRTRQATMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTAKKFDGVEMRDLTIPEIKQIAGRAGRYGSKFPVGEVTCLDGDDLPLIHSALKASSPPIEQAGLFPTFDLMFLYSRLHPKYGLQQILEHFVENAKLSENYFIANCEETLRVATIIDELPLSLHDKYLFCISPVDMDDEITTQGLTQFAESYANKGIVRLREIFTPGSIQVPKTQAALKDLESIHKVLDLYVWLSFRLEESFPDQEVASAQKAICNLLIEEFLERLGWQRPQSRRLSTSRIRSTSLLSHNIRSHL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5524764 5536645 - Conep14aG0088300.1 Cone14ag0866 452715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0866 567 Pfam DEXQ-box helicase domain of Suv3 63 215 - -
Cone14ag0866 567 SMART helicmild6 254 342 IPR001650 -
Cone14ag0866 567 CDD DEXQc_Suv3 75 216 IPR044774 GO:0003724(InterPro)|GO:0005524(InterPro)
Cone14ag0866 567 Pfam Helicase conserved C-terminal domain 237 342 IPR001650 -
Cone14ag0866 567 Pfam Suv3 C-terminal domain 1 424 465 IPR041082 -
Cone14ag0866 567 CDD SF2_C_suv3 220 354 - -
Cone14ag0866 567 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 490 537 IPR022192 GO:0016817(InterPro)
Cone14ag0866 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 185 IPR014001 -
Cone14ag0866 567 FunFam ATP-dependent RNA helicase SUV3, mitochondrial 368 441 - -
Cone14ag0866 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 344 IPR027417 -
Cone14ag0866 567 FunFam ATP-dependent RNA helicase SUPV3L1, mitochondrial 63 217 - -
Cone14ag0866 567 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 50 522 IPR050699 GO:0000965(PANTHER)|GO:0003724(PANTHER)|GO:0006401(PANTHER)|GO:0045025(PANTHER)
Cone14ag0866 567 Gene3D - 57 442 - -
Cone14ag0866 567 Gene3D - 218 369 IPR027417 -
Cone14ag0866 567 Gene3D - 63 217 IPR027417 -
Cone14ag0866 567 Gene3D - 444 552 - -
Cone14ag0866 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 211 384 IPR001650 -
Cone14ag0866 567 FunFam ATP-dependent RNA helicase suv3, mitochondrial 218 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0866 K17675 - - mdm:103424039 875.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0866 Cone-Chr14:5524764 Cone7ag0521 Cone-Chr7:2417917 2.79E-55 dispersed
Cone14ag0866 Cone-Chr14:5524764 Cone4ag0548 Cone-Chr4:2476960 4.79E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34