Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1012 ATGATGGCTTTGACTTGCCAGAGCCTTGATTTTGGACGGAGTGTTTTAGATTTGGTTGCTTACTCTTGTTCTAAGGATAAAGTTAGTAAAATCAATGGAGGTCAGAGAATGGTTTGTTGCCGGAAAGAGATTGCTCAGTGTGTTTCTCAGGGAACTTCTTCATCATTGTTCAATTTGAAGAGAGAGTGGGGGAGCCTGGTTTCATTGACCAATTTGTTTGACGTAGTTGCTGATGATCTGCAGATTCTAAACCAGAATCTTCTTTCAATCGTAGGTGCAGAAAACCCGGTCTTAATGTCTGCAGCTCAACAGATTTTTGGAGCTGGAGGGAAAAGAATTAGACCGGCCTTGGTGTTCCTGGTATCAAGAGCAACTGCCGAGCTAGTTGGACTAAAGGAACTTACCTTGGAGCATAGGCGTTTAGCAGAGATCATCGAGATGATCCACACTGCCAGCTTGATACACGACGATGTTTTAGATGACAGTGATCTACGTAGAGGGAAGAAAACTGTTCATCAATCATTCGGTACAAGAGTAGCGGTACTAGCTGGAGACTTCATGTTTGCACAATCTTCATGGTATCTAGCAAATCTTGAAAACCTAGAAGTCATCAAACTTATCAGCCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAAGCATCATGCCTTTTCGATTGCGATGTAGAGCTCGAAGAGTATTTGCTTAAAAGCTATTACAAGACAGCTTCCTTAGTTTCTGCTAGTACTAAAGGAGCTGCGATTTTCAGTGGGGTGGATCGAAGTACAGCCGAAAATATGTACAAGTACGGAAAGAATCTCGGTCTGTCTTTTCAAATCGTCGACGACATCTTAGATTTTACTCAATCGGCCGAGCAGTTGGGGAAGCCAGCTGGCAATGACTTGGCGAAGGGAAATCTAACCGCTCCGGTTATATTTGCTCTAGAGAAGGAACCGAAATTGAGACAAATAATTGAGTCAGAGTTCAATGAGACAGGGTCACTTGACGAAGCGGTTAAGTTAGTTAAGAGTTGTGGAGGGATTGATAGGGCACGAGAATTGGCTAAGCAGAAAGCGGATCAAGCGATTGAAAGTTTACAATGTCTTCCTCAGAGCACATTTCGGTTAGCCCTTGAGAATATGGTGGCATTTAATCTTGAACGGATTGATTAA 1176 42.52 MMALTCQSLDFGRSVLDLVAYSCSKDKVSKINGGQRMVCCRKEIAQCVSQGTSSSLFNLKREWGSLVSLTNLFDVVADDLQILNQNLLSIVGAENPVLMSAAQQIFGAGGKRIRPALVFLVSRATAELVGLKELTLEHRRLAEIIEMIHTASLIHDDVLDDSDLRRGKKTVHQSFGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASCLFDCDVELEEYLLKSYYKTASLVSASTKGAAIFSGVDRSTAENMYKYGKNLGLSFQIVDDILDFTQSAEQLGKPAGNDLAKGNLTAPVIFALEKEPKLRQIIESEFNETGSLDEAVKLVKSCGGIDRARELAKQKADQAIESLQCLPQSTFRLALENMVAFNLERID 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8477347 8480330 - Conep14aG0103200.1 Cone14ag1012 452861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1012 391 Pfam Polyprenyl synthetase 96 342 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cone14ag1012 391 NCBIfam solanesyl diphosphate synthase 67 390 - -
Cone14ag1012 391 Gene3D Farnesyl Diphosphate Synthase 67 390 IPR008949 -
Cone14ag1012 391 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 63 389 - GO:0004659(PANTHER)|GO:0008299(PANTHER)|GO:0009507(PANTHER)|GO:0010236(PANTHER)
Cone14ag1012 391 SFLD Isoprenoid Synthase Type I 101 388 - -
Cone14ag1012 391 CDD Trans_IPPS_HT 93 389 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cone14ag1012 391 ProSitePatterns Polyprenyl synthases signature 1. 153 167 IPR033749 -
Cone14ag1012 391 ProSitePatterns Polyprenyl synthases signature 2. 275 287 IPR033749 -
Cone14ag1012 391 SUPERFAMILY Terpenoid synthases 69 389 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1012 K05356 - - vvi:100246988 579.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1012 Cone-Chr14:8477347 Cone1ag0277 Cone-Chr1:1886770 2.73E-73 dispersed
Cone14ag1012 Cone-Chr14:8477347 Cone15ag1005 Cone-Chr15:8147891 3.17E-260 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38