Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1019 ATGGAGGCTATTTTCGTCTTTCGATCAATCTTCCAACGGCTCTCCAAATTCCTCTGCCTCTCCGCTTTTGTGTGTTTTCTTTGTCTGAAACTCTCTCTCTCAAATTCTCAAACTCGGTTCGACTCGGTTCGTCTCTGTTATCGTATTCATAAGAAAAGAATTCAAATCAGCAACAACAAAGTGATTGTATCCCTTTTCCAGAACTATCCCGACTACAAAATTATTGTACTAGACAAGCTTGATTATTGTTCAACGCTCAAAAACCTCCTTCCCTCAAAATCATCTCCAAACTTCAAGTTCATTGAAGGCGACATTAGCAGTGCTGAGTTGGTCAATTACCTCTTAGTAGTGGAATCAATAGACACTATAATGCATTTTGCGGCCCAAACCCACGTAGACAACTCGTTCGGAAATAGCTTCGAGTTTACAAAAAACAATATCTATGGAACACATGTTCTTCTAGAAGCTTGTAAAGTCACTGGCCAAATCCGGAGGTTTATCCATGTTAGTACCGATGAGGTCTATGGAGAAACAGATGAGGATGCGGTTGTTGGAAATCACAAAGCTTCTCAACTACTTCCAAGTAATCCTTACTCCGCAACAAAAGTTGGGGCCGAAATGCTTGTCATGGCATATGGTAGGTCATATGGTTTGCCGGTGATTACGACTAGGGGGAACAATGTTTATGGGCCAAATCAATTTCCCGAAAAGCTCATCCCGAAGCTCATACTATTGGTCATGGAAGGTAAGAGTCTTCCAATCCATGGTGACGGTTCAAATGTAAGAAGTTATTTGTATTGTGAGGATGTTGCGGAGGCTTTTGAGCTTGTTCTTCATAAAGGAGAGTTGGACCATGTTTATAATATCGGGACGACAACGGATAGGAGGGTTATAGATGTTGCGGAAGATATATGCAAACTCTTCAAAATGGACAAGGAAAAGAGTATTCAATTTGTTGAAAATAGACCGTTCAATGATCAAAGGTATTTTCTAGACGACCAGAAGATGAAGAATTTGGGGTGGGTGGAATCTACCACTTGGGAAGAAGGGTTGAAGAAGACAATGGAATGGTATGTGAACAATCCCAATTGGTGGGGCGATGTGTCTGGAGCTTTGCTACCTCATCCGAGAATGTTAATGATGCCTAGTGGGTTTGAAAGACCTTTAGATGATGGGTCTAAAGAGGAAGATCAGAAATCTTCTTCTTATTCTTTGAATAGCCGGATGGTGGTCCCATCATCGAAAAACATCATTTTCCAAAAACCATCCTTGAAGTTCTTGATTTACGGAAAAACCGAATGGATCGGGGGTCTTCTTGGCCAACTATGTATGTTCAAAAAACCAACTCATGTTTTCAATGCTGCCGGGGTGACCGGTTGCCCCAATGTTGATTGGTGTGAATCTCATAAAACCGAAACCATCCGGGCCAATGTGGCCGGAACCTTGACCTTAGCCGATGTTTGCAGGAACAGTGGGCTCCTCGTGACGAATTTCGCTACTGGTTGTATAGTTGAGTACGACACTTCACATCCGGAAGGTTCTGGAATCGGATTTAAAGAGGAAGACAAGCCAAATTTCATCGGTTCTTTTTACTCAAAAACCAAGGCCATGGTGGAGGAGCTGCTAAAAGAATATGACAATGTATGTACCCTAAGAGTCAGAATGCCGATCTCATCAGATCTAAACAATCCACGTAACTTCATCACGAAGATATCACGCTATAACAAAGTCGTTAACATCCCTAACAGCATTACTGTTTTGGACGAGCTTCTACCCATTTCGATTGAGATGGCGAAGAGAAACTTGAGAGGGATATGGAACTTTACGAACCCGGGGATTGTAAGCCATAACGAGATTTTGGAGATGTATAAGGAGTACATTGACCCGGAATTTAAATGGGAAAATTTCACTCTTGAAGAGCAAGCCAGAGTGATTGTTGCTCCAGGGAGCAACAACGAAATGGATGCTTCTAAGCTGAAAAAGAAATTCCCCGAGTTGTTCACAAAGGAGTCGTTGATTAAGTATGCTTTTGAACCAAACAAGAAAACCTCTGCGGCATAA 2061 41.97 MEAIFVFRSIFQRLSKFLCLSAFVCFLCLKLSLSNSQTRFDSVRLCYRIHKKRIQISNNKVIVSLFQNYPDYKIIVLDKLDYCSTLKNLLPSKSSPNFKFIEGDISSAELVNYLLVVESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHKASQLLPSNPYSATKVGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKLILLVMEGKSLPIHGDGSNVRSYLYCEDVAEAFELVLHKGELDHVYNIGTTTDRRVIDVAEDICKLFKMDKEKSIQFVENRPFNDQRYFLDDQKMKNLGWVESTTWEEGLKKTMEWYVNNPNWWGDVSGALLPHPRMLMMPSGFERPLDDGSKEEDQKSSSYSLNSRMVVPSSKNIIFQKPSLKFLIYGKTEWIGGLLGQLCMFKKPTHVFNAAGVTGCPNVDWCESHKTETIRANVAGTLTLADVCRNSGLLVTNFATGCIVEYDTSHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSITVLDELLPISIEMAKRNLRGIWNFTNPGIVSHNEILEMYKEYIDPEFKWENFTLEEQARVIVAPGSNNEMDASKLKKKFPELFTKESLIKYAFEPNKKTSAA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8516548 8519328 + Conep14aG0103900.1 Cone14ag1019 452868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1019 686 Gene3D - 432 686 - -
Cone14ag1019 686 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 425 637 IPR036291 -
Cone14ag1019 686 Gene3D - 239 361 - -
Cone14ag1019 686 Pfam NAD dependent epimerase/dehydratase family 443 557 IPR001509 -
Cone14ag1019 686 CDD dTDP_GD_SDR_e 60 363 IPR005888 GO:0008460(InterPro)|GO:0009225(InterPro)
Cone14ag1019 686 Gene3D - 62 352 - -
Cone14ag1019 686 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 372 IPR036291 -
Cone14ag1019 686 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 60 379 - GO:0010253(PANTHER)|GO:0010280(PANTHER)|GO:0010315(PANTHER)|GO:0050377(PANTHER)|GO:0051555(PANTHER)
Cone14ag1019 686 MobiDBLite consensus disorder prediction 384 403 - -
Cone14ag1019 686 Pfam GDP-mannose 4,6 dehydratase 67 354 IPR016040 -
Cone14ag1019 686 FunFam UDP-glucose 4,6-dehydratase 56 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1019 K12450 - - gmx:100775641 1068.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1019 Cone-Chr14:8516548 Cone9ag0239 Cone-Chr9:1021249 0 dispersed
Cone12ag1521 Cone-Chr12:10766696 Cone14ag1019 Cone-Chr14:8516548 0 wgd
Cone14ag1019 Cone-Chr14:8516548 Cone6ag0211 Cone-Chr6:998981 0 wgd
Cone14ag1019 Cone-Chr14:8516548 Cone8ag1566 Cone-Chr8:11700740 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0211 Cone9ag0239 Cone14ag1019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86