Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1023 ATGAAGATTCAGTGTAACGTTTGCGAGGCGGCGGAAGCGAATGTGCTGTGCTGTGCGGATGAAGCGGCGCTGTGCTGGGCTTGCGACGAGAAGGTTCATGCGGCTAATAAGTTGGCCAGCAAGCACCAGAGGGTTCCTCTTTCTGGCTCTTCTTCTCAGATGCCGAAATGCGATATTTGCCAGGAGGCAAGTGGTTACATCTTTTGTCTAGAGGATCGAGCCTTACTTTGCAGAAAATGTGATGTTTCCATACACACCGCAAATAAATACGTATCTGGTCATCAGAGGTTCCTGTTAACCGGCGTGAAGGTGGCTCTTGAACCTACTGAACCAGGCGCTTCCTCTTCCATGATAAAATCACATTCCGAGGAGAAAACGTCAGAGCCTAAATCTAGTAGTCCTGCATGGAGAAGAGGTCTTACTATGTCCTCAGCTGATGAATTGAGTGAAACGTTACCTACACGTGTTGGTGGACTTGGGGACTTTGCACCAACCAGAGGGTCATTCTCTGGAGGCTCTATTGGTGGTGGCTTTCCTCAATGGCATGTAGACGACTTTATGAGTCTGACCGGATTCGGTCATAGCTATGGTTATATGGATAACAACTCATCAAAGGCTGATAGTGGCAAGCTTGGGGACTCTGACTCATCAGCTCTAAGAGCTTCAGAGGAAAGTCTAGATGACGAGGAGTGCCTTGGTCAAGTACCGGATGCTTCTTGCACCGTACCTCAGATTCCCTCTCCACCTACAGCATCCGGGTTGTACTGGTCCAGAAATTTTCTCAACCAAATGGATGGACCCGTCTCTGTCCCTGATTTATGCTTCTCCCCTGCACAAAAGCCCCACCGCTATCAGCATAATAACGCGCGCTTCAAACGGAGGAGGCAGAATTAG 894 49.11 MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVSIHTANKYVSGHQRFLLTGVKVALEPTEPGASSSMIKSHSEEKTSEPKSSSPAWRRGLTMSSADELSETLPTRVGGLGDFAPTRGSFSGGSIGGGFPQWHVDDFMSLTGFGHSYGYMDNNSSKADSGKLGDSDSSALRASEESLDDEECLGQVPDASCTVPQIPSPPTASGLYWSRNFLNQMDGPVSVPDLCFSPAQKPHRYQHNNARFKRRRQN 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8542344 8544637 + Conep14aG0104300.1 Cone14ag1023 452872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1023 297 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Cone14ag1023 297 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Cone14ag1023 297 CDD Bbox1_BBX-like 56 99 IPR049808 -
Cone14ag1023 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 263 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone14ag1023 297 Gene3D Classic Zinc Finger 1 93 - -
Cone14ag1023 297 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Cone14ag1023 297 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone14ag1023 297 MobiDBLite consensus disorder prediction 205 227 - -
Cone14ag1023 297 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone14ag1023 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone14ag1023 297 MobiDBLite consensus disorder prediction 110 138 - -
Cone14ag1023 297 FunFam B-box zinc finger protein 22 1 93 - -
Cone14ag1023 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1023 Cone-Chr14:8542344 Cone18ag0848 Cone-Chr18:5803138 1.49E-44 dispersed
Cone14ag1023 Cone-Chr14:8542344 Cone17ag1378 Cone-Chr17:9569772 5.74E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone18ag0848 . 1 161 Orphan Transcription Factor Family AT1G06040 71.4 7.4e-62 234.2
Cone14ag1023 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 3.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44784 None None None None Cone TR