Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1030 ATGTTGAAGCAACTCTCTCTAAATCGACAAATCCAATCCCTCTTCCCCATTGCCTTAACATCTTTTCTTGTTTTAGGCACAGCCCGTTTAGTTATAGACAGCTTGAAGAGCAATAGCAGCCATATTTTCCGGGCAAGAATACTCGTTAACAATCAAAAGCACAAGTTGCCGGTTTTTGTTTCCGAAGAGGATCGGTTCAATGACAAAGATTGCAATCTCTTTGAAGGAAAATGGGTGTGGGATAATGTCTCTTATCCTCATTATGGTGAAGAGAGTTGCCCTTACTTGGTTAAGCAAGTTACTTGTGAGAAGAATGGGAGGCCTGATTCTTTCTATAAGAATTGGAGGTGGCAACCTAATTCATGCAATTTACCTAGTTATGAGTCTACAGAAAATGTGAAAGAATACAATGTCACTACTGCATACAGATTGGCATTAGAAACTTGGGCGAATTGGATTGAATTCACTATCAACCCTCTTTCCCAAAAAGTCTTTTTCATGACCATGTCTCCAACACACTTGTGGATATCCTCTGCTCCGATCTCGCCTGTAAATTATCTTTCAAACCCCCTTTTATATCGAATTTTTTATTATTCAGAAATGTGTTATTTTGCATCGAACATGACCCAGTCGAATAACTATAAATCTATCGTAAGGAGCACTATTTTCTCGCCTTTGTCTCTTAGTATCTCCACTAGATCAAACCCTTTCCGAGCCTTGCTCTTAACTGCTAATGTGGGCGAGACATTAGATTCATGGGATAATCAAATTTTAAGCATGGCGGTTGAGTTAGATAGCCGCAATGATTCGTTAGAAGGTCTTGAAAATGTGGATGATAAGGAACAGGAAAGGAGAAGAAAGATAGGTTTAGCAAATAAAGGGAGAGTGCCATGGAACAAAGGCCGGAAACATAGTGCTGAGACTTGTGAGCGAATCAAGCAAAGAACAAGAGAGGCACTGAGAGATCCCAAGGTTCGGAAGAAGATGTCTGAGCATCCCCGTTCTCAGAGTGATAGGGTAAAGGATAAAATAAGCTCTTCACTTAGACGGGTTTGGAAAGAGCGCTTGAAATGGAAAAGTTCAAGCAAAAAGTTCTTGCTTTCATGGGCTGAAAGCATAGCAATGGAAGCTAAAAAGGGGAGAAAAGAACAAAAAGAGCTTGATTGGGATAGCTATGATAATATAAAGCAAGAAATGGCTGTTCAACAACTTCAATGGGTTGTAGAAAAAGCGAAGGCAAAAGAAATGGCAAAGGAAAGAGCAGAGAATCGAGCAAAGATTAAAGCTGAAAACAGAGAAAAAGATGTTTCTATAAGAAAAGAGAGGGCGAGAAAATGTTATAGAAAGAGTAAAGAGCAGAAAAGGGGACCGAATGAAAGAGGAGATATCTTGAGCAAATCCAAGGAAGATGGGAAAGAAGTAACAGTGGCTAGAAGATTAAAACTTAAACAGAGATTAGCGAAGATTCGGAAAAAGAAATCGATAAATGGCAAGATCGACAAATCGATTTTCCATACGACTGCTTGGGAGAAACTCAATTTGGAGCTTTTGAAGAACGAAACATTATCTCAAAAGGAAGTTTCTTTAGCAGATCTGATCCAAATTATCAAAAGTAGGAAAGCAGAACCCGAGCCTGGAAAAGTTCTTTCCCAGTGA 1656 39.37 MLKQLSLNRQIQSLFPIALTSFLVLGTARLVIDSLKSNSSHIFRARILVNNQKHKLPVFVSEEDRFNDKDCNLFEGKWVWDNVSYPHYGEESCPYLVKQVTCEKNGRPDSFYKNWRWQPNSCNLPSYESTENVKEYNVTTAYRLALETWANWIEFTINPLSQKVFFMTMSPTHLWISSAPISPVNYLSNPLLYRIFYYSEMCYFASNMTQSNNYKSIVRSTIFSPLSLSISTRSNPFRALLLTANVGETLDSWDNQILSMAVELDSRNDSLEGLENVDDKEQERRRKIGLANKGRVPWNKGRKHSAETCERIKQRTREALRDPKVRKKMSEHPRSQSDRVKDKISSSLRRVWKERLKWKSSSKKFLLSWAESIAMEAKKGRKEQKELDWDSYDNIKQEMAVQQLQWVVEKAKAKEMAKERAENRAKIKAENREKDVSIRKERARKCYRKSKEQKRGPNERGDILSKSKEDGKEVTVARRLKLKQRLAKIRKKKSINGKIDKSIFHTTAWEKLNLELLKNETLSQKEVSLADLIQIIKSRKAEPEPGKVLSQ 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8702886 8707012 - Conep14aG0105000.1 Cone14ag1030 452879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1030 551 MobiDBLite consensus disorder prediction 452 470 - -
Cone14ag1030 551 Pfam PMR5 N terminal Domain 70 123 IPR025846 -
Cone14ag1030 551 MobiDBLite consensus disorder prediction 295 342 - -
Cone14ag1030 551 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 128 174 IPR026057 GO:0016740(InterPro)
Cone14ag1030 551 MobiDBLite consensus disorder prediction 422 470 - -
Cone14ag1030 551 Coils Coil 413 433 - -
Cone14ag1030 551 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 161 542 - -
Cone14ag1030 551 MobiDBLite consensus disorder prediction 300 342 - -
Cone14ag1030 551 MobiDBLite consensus disorder prediction 422 442 - -
Cone14ag1030 551 Pfam NUMOD3 motif 283 311 IPR003611 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1030 Cone-Chr14:8702886 Cone15ag1016 Cone-Chr15:8467707 6.39E-94 dispersed
Cone14ag1026 Cone-Chr14:8556739 Cone14ag1030 Cone-Chr14:8702886 6.73E-09 proximal
Cone14ag1030 Cone-Chr14:8702886 Cone15ag1015 Cone-Chr15:8465158 2.09E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g130 . . . . . . . . . Cmo04g00608 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1030 Cone15ag1015 . . . . Blo07g00963 . Bda05g00786 . . . . . . . . Cma04g00568 . Car04g00539 . . Cpe01g00514 . . . . . . . Cla07g00954 Cam07g1028 Cec07g1098 Cco07g1077 Clacu07g0997 Cmu07g0993 Cre07g1368 . . Chy07g00967 Cme07g01338
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010897 2 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31