Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1035 ATGGCTTCAGGGCAACTACGTGGAGGTGACGGTGCGAGAGAGAATCACAGAAAACACCAAAACAAGGCGAAGAATCCGAGCTATCATCTTCCTCAACGCTCCTCCTCACAAGCTGTAGGAACTACTACTGCTACTGCCTCTGCTCGGAACGACAACTCAGACGATTCCTCGAGCGAAAACCCTGAACCAGAGCGGTCTAATCCAAGGTACGAAAACTGGGTTAGGATTAGTGTAAAGTCCAAGTCTAAAGCTGGCGTTAAGGAGCTTAAGAGAAAGTTGGAGAGTGAACTTGATCAAGTTAGGGTTCTTGTAAAAAAGCTTGAAGCGAAGGAGTTTCAGTTAACTAGTGGTGGTGGTGGTTATAGTCAATCACAGTTCTCGTCCAGTAATGTTGTAGAGAATGTTCGACCCAAGGTGGGTCCCTCTGGAATTCCCGCTTCGAGTGGTAAAATTGTGGAGAAGGAAAAGAAGCAGATGGTTAAGACCAGTAATAAGAATGATCAAAACCAACCCAGTCATGTTCCGAGAAAGGAGAAGTTCCCCTCCAATAAGAAGAATGAGCCCCCTATACGGGAACCCAGGTTTGAGTTTGGGATGGATAAGAGAACAAGTCCATTATTTCAAAGTTGTAGCAATTTGCTCGAGAATTTGATGAAGCATAAGTATGGATGGGTGTTTAACATGCCGGTAGATGCAAAGGGATTAGGGCTTCATGATTATCATACGATTATAAAGCAACCCATGGATTTGGGGACGGTCAAGACGAGGCTAAATAAGAACTGGTATAAGTCTCCTAGAGAATTTGCAGAGGATGTAAGACTTACATTTAGTAATGCCATGTTGTATAACCCGAAAGGGCAAGATGTGTATCTTATGGCAGAGCAGTTGTCTAAGATGTTTGAAGATAAATGGACAAGTATGGAGGCGAAGTATAATCTTAACAAAAAGAAATCCCGAGCTGATAGTAGTGCCGTTATGCCTAAACAAACTTTGAAAAATCCACCAATTTCGAAAAGTGTGCCAACCTCTACAGCTCCTCCTCCTGTATCAGAAGTGAGGAATATCGGAAGATCGGAATCTATGACTAAGCTGAATCCGGATAGAGCAGAACCAAGGTCTAAGCCCATAGAATCCGCATTGAAACCGGCAAATTTGGGTAATCATGGTAAAACCTTGGTTTCAAAGAAGCCTAAAGCTAAGGACCCTGATAAGAGGGATATGACTTTTGAAGAGAAGCAAAGGCTTAGCTTGAGTCTTCAGAGTTTGCCTTCGGAAAAACTAGATAATATTGTTCAGATTATTAAGAAAAGGAATCAAGGGCTTTGCCAGAATGATGATGAGATTGAGGTGGATATTGCTAGTGTTGATCCAGAAACTCTTTGGGAGCTTGATAGATTCGTGACTAATTATAAAAAGAGCTTGAGCAAGAACAAGAGGAAAGCTGAAGTTGCTGGTCTAAGTAAAGAAGAAGAAGAAGTAGAAGAAGAAGATGTTTCCGCTAACCCGAATCTAGAAGTAGCTTCTGCGAGGGTACACAAAGATTGTAATCCAGACACGGAGAGCGATAGTTCCTCTGCATTTGGATCAGATGGTAGTCACTCAGCTAGTGGTTGA 1614 42.57 MASGQLRGGDGARENHRKHQNKAKNPSYHLPQRSSSQAVGTTTATASARNDNSDDSSSENPEPERSNPRYENWVRISVKSKSKAGVKELKRKLESELDQVRVLVKKLEAKEFQLTSGGGGYSQSQFSSSNVVENVRPKVGPSGIPASSGKIVEKEKKQMVKTSNKNDQNQPSHVPRKEKFPSNKKNEPPIREPRFEFGMDKRTSPLFQSCSNLLENLMKHKYGWVFNMPVDAKGLGLHDYHTIIKQPMDLGTVKTRLNKNWYKSPREFAEDVRLTFSNAMLYNPKGQDVYLMAEQLSKMFEDKWTSMEAKYNLNKKKSRADSSAVMPKQTLKNPPISKSVPTSTAPPPVSEVRNIGRSESMTKLNPDRAEPRSKPIESALKPANLGNHGKTLVSKKPKAKDPDKRDMTFEEKQRLSLSLQSLPSEKLDNIVQIIKKRNQGLCQNDDEIEVDIASVDPETLWELDRFVTNYKKSLSKNKRKAEVAGLSKEEEEVEEEDVSANPNLEVASARVHKDCNPDTESDSSSAFGSDGSHSASG 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8723793 8726970 - Conep14aG0105500.1 Cone14ag1035 452884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1035 537 PRINTS Bromodomain signature 237 253 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 PRINTS Bromodomain signature 271 290 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 PRINTS Bromodomain signature 253 271 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 PRINTS Bromodomain signature 221 234 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 Coils Coil 476 496 - -
Cone14ag1035 537 CDD Bromo_plant1 206 304 IPR037377 -
Cone14ag1035 537 MobiDBLite consensus disorder prediction 477 537 - -
Cone14ag1035 537 Gene3D - 184 325 IPR036427 GO:0005515(InterPro)
Cone14ag1035 537 MobiDBLite consensus disorder prediction 55 69 - -
Cone14ag1035 537 MobiDBLite consensus disorder prediction 323 361 - -
Cone14ag1035 537 MobiDBLite consensus disorder prediction 520 537 - -
Cone14ag1035 537 Pfam Bromodomain 210 294 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 PANTHER OSJNBA0053K19.4 PROTEIN 54 523 - -
Cone14ag1035 537 ProSiteProfiles Bromodomain profile. 218 290 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 Coils Coil 86 110 - -
Cone14ag1035 537 Gene3D - 400 481 IPR038336 -
Cone14ag1035 537 MobiDBLite consensus disorder prediction 137 192 - -
Cone14ag1035 537 SUPERFAMILY Bromodomain 185 311 IPR036427 GO:0005515(InterPro)
Cone14ag1035 537 MobiDBLite consensus disorder prediction 315 406 - -
Cone14ag1035 537 MobiDBLite consensus disorder prediction 25 54 - -
Cone14ag1035 537 Pfam Bromodomain extra-terminal - transcription regulation 407 468 IPR027353 -
Cone14ag1035 537 ProSiteProfiles NET domain profile. 397 478 IPR027353 -
Cone14ag1035 537 MobiDBLite consensus disorder prediction 171 192 - -
Cone14ag1035 537 SMART bromo_6 199 309 IPR001487 GO:0005515(InterPro)
Cone14ag1035 537 MobiDBLite consensus disorder prediction 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1035 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1380 Cone-Chr10:10738662 Cone14ag1035 Cone-Chr14:8723793 3.11E-97 dispersed
Cone12ag1010 Cone-Chr12:8536295 Cone14ag1035 Cone-Chr14:8723793 1.25E-65 dispersed
Cone14ag1035 Cone-Chr14:8723793 Cone3ag1451 Cone-Chr3:33185721 5.15E-91 dispersed
Cone14ag1035 Cone-Chr14:8723793 Cone15ag1021 Cone-Chr15:8487324 5.56e-318 wgd
Cone14ag1035 Cone-Chr14:8723793 Cone8ag1543 Cone-Chr8:11580515 7.79E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48