Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1070 ATGGCTACAGTGCTCGAAACTCTCGCCGTTCCTCGCTCTTCTCCCGCCATGGCCTCCCCTACTTTCTCCCCCATCTCGGCCTCCTCCGTTTCTTCGTTCTCCGGCCGTCGGACCTCCTCCGTTTCTTCGTTCTCCGGCCGTCGGACCTCCGTTTCCGTCCCGAAGTTCAGAGGCCTCAGGATCTCCACCTCCGTCTCTACCGGATCGGTTTGCTACAATCCGAGACTCGCTCGCCGTGGTGCTAGGATCGTTTGTGAGGCTCAGGATACTGCTGTTGCAGTGCCTGCTGTTACCGATGCCAACTGGCAATCAGTAGTCCTGGAATCTGATCTCCCCGTTCTAGTCGAATTCTGGGCCCCATGGTGTGGACCCTGCCGTATGATCCATCCAATCATAGATGAATTGTCAAAGGAATACATCGGAAAGTTCAAATTCTTCAAGGTTAACACTGATGAGAGCCCTTCCATTGCAACCCAATACGGAATCCGAAGCATTCCCACCGTTATCATCTTCAAGAGCGGCGAAAAAAAAGATGCAGTTATTGGCGCTGTTCCGAAATCCACATTAACCACAAGTATCGAGAAATTCTTATAA 594 52.02 MATVLETLAVPRSSPAMASPTFSPISASSVSSFSGRRTSSVSSFSGRRTSVSVPKFRGLRISTSVSTGSVCYNPRLARRGARIVCEAQDTAVAVPAVTDANWQSVVLESDLPVLVEFWAPWCGPCRMIHPIIDELSKEYIGKFKFFKVNTDESPSIATQYGIRSIPTVIIFKSGEKKDAVIGAVPKSTLTTSIEKFL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8994984 8997157 + Conep14aG0109100.1 Cone14ag1070 452919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1070 197 SUPERFAMILY Thioredoxin-like 91 197 IPR036249 -
Cone14ag1070 197 ProSitePatterns Thioredoxin family active site. 114 132 IPR017937 -
Cone14ag1070 197 NCBIfam thioredoxin 98 196 IPR005746 GO:0015035(InterPro)
Cone14ag1070 197 CDD TRX_family 100 194 - -
Cone14ag1070 197 PANTHER GEO12009P1 69 197 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cone14ag1070 197 Gene3D Glutaredoxin 94 197 - -
Cone14ag1070 197 FunFam Thioredoxin 88 197 - -
Cone14ag1070 197 PRINTS Thioredoxin family signature 113 121 - -
Cone14ag1070 197 PRINTS Thioredoxin family signature 121 130 - -
Cone14ag1070 197 PRINTS Thioredoxin family signature 161 172 - -
Cone14ag1070 197 ProSiteProfiles Thioredoxin domain profile. 85 197 IPR013766 -
Cone14ag1070 197 MobiDBLite consensus disorder prediction 25 44 - -
Cone14ag1070 197 Pfam Thioredoxin 95 194 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1070 K03671 - - cit:102621218 226.868
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1070 Cone-Chr14:8994984 Cone17ag0803 Cone-Chr17:6354776 4.61E-54 dispersed
Cone1ag0157 Cone-Chr1:878329 Cone14ag1070 Cone-Chr14:8994984 7.12E-09 wgd
Cone12ag1457 Cone-Chr12:10473132 Cone14ag1070 Cone-Chr14:8994984 2.28E-59 wgd
Cone14ag1070 Cone-Chr14:8994984 Cone15ag1059 Cone-Chr15:8773164 2.87E-111 wgd
Cone14ag1070 Cone-Chr14:8994984 Cone8ag1505 Cone-Chr8:11392596 3.40E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43