Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1071 ATGGATCGTGTGCTAAAGGCAGCAAGAACATCCGGTTCACTCAACCTATCGAATCGCTCACTCAGGGAAGTGCCGGGTGAGATTTATCGGAGTTTGGACGCAGTTCAGCAGGATGAAAAATGGTGGGAGGCTGTGGAGTTACAGAAACTAATATTGGCTCATAATGAGATTGAATTATTGAATGAAGATCTTAGGAATTTAGCTTTTCTCACTGTCCTAAATGTTAGCCACAACAAGCTTTCTGACCTTCCCGTTGCAATTGGAGAGCTTCCTACATTGAAATCACTAGATGTATCATTCAATTTGATAGTAAAAGTACCTGGAGAAATTGGATCAGCAACTTCTCTTGTAAAATTTGATTGTTCAAGCAACCGGCTTCAGGAACTACCAAGCTCACTTGGCAGATGCTCAAATCTGTCTGATTTGAAGGCTTCAAACAACGCAATTACAAGCTTGCCGGATGATCTTGCCACCTGTTCGAAATTAACAAAACTAGATGTGGAGGGAAACATGCTAACATCGCTATCCAACAATTCGATTGCATCATGGACCATGCTCACTGAACTTAATGCATCCAAAAACTTGCTAAATGGTTTTCCAGAGAATATTGGAAGTCTCTCACGTCTTATTCGTTTGGATGCTCACCAAAATAGGATTTCATCAATTCCATCTTCTATAATGGGTTGCTCTGCCCTTGCGGAATTCTTTATGGGAAATAATGCACTATCTTCATTACCTGCGGAGATTGGGGAACTTTCACACTTAGGAACTTTAGATCTTCGCTCAAACCAGTTGAAAGAGTATCCTGTTCAAGCCTGCAAACTGCGACTTTCAGTACTAGATCTTTCAAACAATTCATTGAGTGGATTGCCTCCAGAAATGGGTAAGATGACTACCTTGCGAAAGCTTTTGCTCAATGGAAATCCTTTGAGAACTCTTCGTAGCTCACTGGTTTCTGGACCCGCACCTGCTTTGTTGAGGCATCTTCGAAGTAGACTTGCTGAGGGTGAAGATTCTGAAGTTACTACGCCATCAAAAGATAACGTTATTGCTATGGCAGCTCGAATGTCCTTGACATCAAAGGAACTTTCTCTGTTAGGGCTTGGGTTGAGTGCTGTCCCATCAGAAGCATGGGAATCAAGAGAGACCACAAAGCTTGATCTTTCTAGAAACTCCATCCAGGAGCTTCCTGTTGAACTGTCCTTGTGTACTTCGCTACAGAGCCTTATTTTGTCTGGGAACAAGATTAAAGATTGGCCTGGTGGAATTTTGAGCTCATTTCCTAATCTTCTGTGTTTGAAGCTGGACAATAATCCACTCGGACAGATTCCCTTGGACAGTTTTCAAGCACTCTCTACGCTACAAGTTCTTGATTTAAGTGGGAATTCAGCTTCATTGCCAAATAACCCCCCATTTTCAAGCTTACCCAATTTGCAAGAGCTGTATTTAAGGCGAGTCAAGCTCCAAGAAATCCCATCAAGTATATTAAGCTTACAGAAAATCCGGATTCTTGACTTGAGCCAAAATTCCCTTCAATCAGTTCCAGAGGGGCTCAAAAATCTTAAATCTCTTACTGAGCTCGACCTATCTGACAATAGCATCGCAATGCTTCCTCCCAGTCTGGGTTTGCTTGAACCTAGCCTGCAACTCTTGAGACTCGATGGAAATCCATTAAGAAGTATACGGAGGGCAATTCTAGAGAGAGGAACCAAAGCCGTGTTGAGCTATTTGAAGGACAGAATTACAGACCAATAG 1755 42.28 MDRVLKAARTSGSLNLSNRSLREVPGEIYRSLDAVQQDEKWWEAVELQKLILAHNEIELLNEDLRNLAFLTVLNVSHNKLSDLPVAIGELPTLKSLDVSFNLIVKVPGEIGSATSLVKFDCSSNRLQELPSSLGRCSNLSDLKASNNAITSLPDDLATCSKLTKLDVEGNMLTSLSNNSIASWTMLTELNASKNLLNGFPENIGSLSRLIRLDAHQNRISSIPSSIMGCSALAEFFMGNNALSSLPAEIGELSHLGTLDLRSNQLKEYPVQACKLRLSVLDLSNNSLSGLPPEMGKMTTLRKLLLNGNPLRTLRSSLVSGPAPALLRHLRSRLAEGEDSEVTTPSKDNVIAMAARMSLTSKELSLLGLGLSAVPSEAWESRETTKLDLSRNSIQELPVELSLCTSLQSLILSGNKIKDWPGGILSSFPNLLCLKLDNNPLGQIPLDSFQALSTLQVLDLSGNSASLPNNPPFSSLPNLQELYLRRVKLQEIPSSILSLQKIRILDLSQNSLQSVPEGLKNLKSLTELDLSDNSIAMLPPSLGLLEPSLQLLRLDGNPLRSIRRAILERGTKAVLSYLKDRITDQ 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8997902 9003268 + Conep14aG0109200.1 Cone14ag1071 452920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1071 584 SUPERFAMILY L domain-like 45 315 - -
Cone14ag1071 584 Pfam Leucine rich repeat 476 534 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 Pfam Leucine rich repeat 405 462 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 SMART LRR_typ_2 252 275 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 114 136 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 427 450 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 498 520 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 546 568 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 206 229 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 521 544 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 404 426 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 90 113 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 297 320 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 67 88 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 160 182 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 137 159 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 384 403 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 475 497 IPR003591 -
Cone14ag1071 584 SMART LRR_typ_2 276 296 IPR003591 -
Cone14ag1071 584 SUPERFAMILY L domain-like 361 561 - -
Cone14ag1071 584 PANTHER - 359 562 IPR050216 -
Cone14ag1071 584 Gene3D Ribonuclease Inhibitor 1 174 IPR032675 -
Cone14ag1071 584 Gene3D Ribonuclease Inhibitor 175 272 IPR032675 -
Cone14ag1071 584 Gene3D Ribonuclease Inhibitor 273 331 IPR032675 -
Cone14ag1071 584 Gene3D Ribonuclease Inhibitor 467 580 IPR032675 -
Cone14ag1071 584 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 SMART LRR_bac_2 475 494 - -
Cone14ag1071 584 SMART LRR_bac_2 136 155 - -
Cone14ag1071 584 SMART LRR_bac_2 498 517 - -
Cone14ag1071 584 SMART LRR_bac_2 186 202 - -
Cone14ag1071 584 SMART LRR_bac_2 521 540 - -
Cone14ag1071 584 SMART LRR_bac_2 67 86 - -
Cone14ag1071 584 SMART LRR_bac_2 90 109 - -
Cone14ag1071 584 SMART LRR_bac_2 252 271 - -
Cone14ag1071 584 SMART LRR_bac_2 206 225 - -
Cone14ag1071 584 SMART LRR_bac_2 159 178 - -
Cone14ag1071 584 Pfam Leucine Rich Repeat 277 293 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 PRINTS Leucine-rich repeat signature 277 290 - -
Cone14ag1071 584 PRINTS Leucine-rich repeat signature 521 534 - -
Cone14ag1071 584 FunFam Leucine-rich repeat-containing protein 40 472 580 - -
Cone14ag1071 584 ProSiteProfiles Leucine-rich repeat profile. 500 522 IPR001611 GO:0005515(InterPro)
Cone14ag1071 584 Gene3D Ribonuclease Inhibitor 354 466 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1071 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1071 Cone-Chr14:8997902 Cone15ag1064 Cone-Chr15:8796099 3.38E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33